DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yrt and frmd5b

DIOPT Version :9

Sequence 1:NP_650291.1 Gene:yrt / 41656 FlyBaseID:FBgn0004049 Length:972 Species:Drosophila melanogaster
Sequence 2:XP_021333528.1 Gene:frmd5b / 569968 ZFINID:ZDB-GENE-060810-165 Length:571 Species:Danio rerio


Alignment Length:452 Identity:156/452 - (34%)
Similarity:234/452 - (51%) Gaps:57/452 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 KIDCRVILLDNTDLSIELSKKALGSFLYEQVFYALDIIEKDYFGLQFMDANHVKHWLDPTKPIKK 121
            :.:|.|.|||:::.:..:.:.|.|.:|:|||...|:::||||||::|:|.:..:|||:.:|||.|
Zfish    16 EFNCTVRLLDDSEYTCTVQRDAKGHWLFEQVCQHLNLLEKDYFGIRFVDPDKQRHWLEFSKPITK 80

  Fly   122 QVKIGPPYTFRLKVKFYSSEPNTLREELTRYLFFLQLKQDLLEGRLDCPEDKATELCALALQSEL 186
            |::..||||..|:||||..:|..|:||:||||.|||:|:||..|||.|....|..|.|..||:|:
Zfish    81 QMRSQPPYTMCLRVKFYPPDPAALKEEITRYLLFLQIKRDLYHGRLLCKSSDAATLAAFILQAEI 145

  Fly   187 GDYDNQEHSAATVSEFRFVPEQTEDLEIAILDEYKT-CRGLTPAQAETAFLNKAKWLDMYGVDMH 250
            ||||..:|.....|:|:|.|:.:|.||..|.:.:|: ..|.:|..:|..||.||:.|:.||||.|
Zfish   146 GDYDPGKHPEGYSSKFQFFPKHSERLERRIAEIHKSELTGQSPETSELNFLRKAQTLETYGVDPH 210

  Fly   251 TVLGKDGCEYHLGLTPTGILVFERDQKIGLFFWPKISKLDFKKKKLTLIVIEDDDEGREQEHTFV 315
            ......|....|..||.|.:|.:.:::|....|.:::||.|:.|...:.....:|    |:....
Zfish   211 PCKDVSGNTAFLAFTPFGFVVLQGNRRIHFLKWNEVTKLKFEAKTFHIYATHQED----QKIILT 271

  Fly   316 FRLYNEKACKHLWKCAVEHHTFFRLR--APVKGPSARQNFFRMGSRFRYSGRTEFQTTQQS-RAR 377
            :.....:||||||||.||:..|::..  :.|:..|:...||: ||||||||:...:..:|| :.|
Zfish   272 YFAPTPEACKHLWKCGVENQAFYQFEKSSQVRTVSSSNLFFK-GSRFRYSGKVAKEVMEQSAKIR 335

  Fly   378 R---------TVQFERRPSQRFASRQSHLLRERQKASQEAAVSAVASVNARAAAAAAAAAASQSP 433
            |         .|.....||.....|||.:.|.|::|...:.:..:.|                  
Zfish   336 REPPEIHRAGMVPSRSCPSITHGPRQSSVPRTRRRAVHISIMEGLES------------------ 382

  Fly   434 APATPLVSSQVSTPTPNNDNNNDAFDSL------------ISTDQFITVTPSPSVL-TVIQN 482
                 |..|..|||..:..|:|....|.            .|.|.:   :||.||| |.:.|
Zfish   383 -----LRDSGHSTPVRSVSNSNSFLRSQGNGAEGGSGTAEFSEDSY---SPSDSVLPTPVSN 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yrtNP_650291.1 B41 60..250 CDD:214604 87/190 (46%)
FERM_N 62..124 CDD:286467 27/61 (44%)
FERM_M 143..250 CDD:278785 49/107 (46%)
FERM_C_NBL4_NBL5 246..339 CDD:270007 29/92 (32%)
FA 352..392 CDD:285894 17/49 (35%)
PHA03255 771..>924 CDD:165513
frmd5bXP_021333528.1 B41 19..210 CDD:214604 87/190 (46%)
PH-like 191..294 CDD:327399 35/106 (33%)
FA 309..>343 CDD:312314 14/34 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586165
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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