DRSC/TRiP Functional Genomics Resources

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Protein Alignment yrt and epb41l4a

DIOPT Version :9

Sequence 1:NP_650291.1 Gene:yrt / 41656 FlyBaseID:FBgn0004049 Length:972 Species:Drosophila melanogaster
Sequence 2:NP_001006910.1 Gene:epb41l4a / 448757 XenbaseID:XB-GENE-953979 Length:678 Species:Xenopus tropicalis


Alignment Length:540 Identity:194/540 - (35%)
Similarity:273/540 - (50%) Gaps:104/540 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 CRVILLDNTDLSIE-----LSKKALGSFLYEQVFYALDIIEKDYFGLQFMDANHVKHWLDPTKPI 119
            |.|:|||.:.|.:.     :.|...||.:.:.||..|:::|.|||||::.|.||..:||||.|.|
 Frog    13 CEVLLLDESKLPLTCQQQGVKKSTKGSVVLDYVFRHLNLVEIDYFGLRYCDRNHQTYWLDPMKTI 77

  Fly   120 KKQ---VKIGPPYTFRLKVKFYSSEPNTLREELTRYLFFLQLKQDLLEGRLDCPEDKATELCALA 181
            .:.   :..|||||....||||:.:|..|:||:|||.||||:|||:|:|||.||.:.|.:|.|.|
 Frog    78 SEHRDLISTGPPYTLYFGVKFYAEDPCKLKEEITRYQFFLQVKQDVLQGRLPCPFNIAAQLGAYA 142

  Fly   182 LQSELGDYDNQEHSAATVSEFRFVPEQTEDLEIAILDEYKTCRGLTPAQAETAFLNKAKWLDMYG 246
            :||||||||..:|....|||:||||:|.||||.||...:||..|..||.||:.:|..||.|:|||
 Frog   143 IQSELGDYDPFKHVTGYVSEYRFVPDQKEDLEEAIEKIHKTLMGQVPAVAESNYLGVAKSLEMYG 207

  Fly   247 VDMHTVLGKDGCEYHLGLTPTGILVFERDQKIGLFFWPKISKLDFKKKKLTLIVIEDDDEGREQE 311
            ||:|.|.|::..||.|||||.|:.|::..:::|.::||:|:||.||:.:..:.|:..|.    .|
 Frog   208 VDLHPVYGENNSEYFLGLTPVGLFVYKNKKQVGKYYWPRITKLHFKETQFEVRVLGKDC----TE 268

  Fly   312 HTFVFRLYNEKACKHLWKCAVEHHTFFRLRAPVKGPSARQ--NFFRMGSRFRYSGRTEFQTTQQS 374
            .:|.|...|:.:||.||||.||||||||:........:|:  ....:|||.||||||.:|.::. 
 Frog   269 TSFFFETRNKVSCKSLWKCCVEHHTFFRIPENDSSTLSRKLSKLGSLGSRHRYSGRTAYQMSRD- 332

  Fly   375 RARRTVQFERRPSQRFASRQSHLLRERQKASQEAAVSAVASVNARAAAAAAAAAASQSPAPATPL 439
               .::|.. ||.||....:|....:|                         ||.:|.|.     
 Frog   333 ---LSIQLP-RPDQRVERSRSKTYPKR-------------------------AALTQQPG----- 363

  Fly   440 VSSQVSTPTPNNDNNNDAFDSLISTDQFITVTPSPSVLTVIQNSAIIEPDAACSGSISSSSQAAA 504
             |:.:..||.|.:..:..     .|.:||  .|||                     :.||.:|..
 Frog   364 -SNNIEQPTTNMEQGDKE-----GTTKFI--APSP---------------------VKSSKKAKR 399

  Fly   505 NFASLGRNSLKSNFSNEDPAYSKIGS----IGKASGLTVKLDPDYTPPYSPNATKNFDETNPFRN 565
            :             ::.|...|||.:    .|..|||       |..|...|.:..| .|...||
 Frog   400 D-------------TSPDTQKSKISAPWEENGTPSGL-------YNSPNDRNKSPKF-PTPRHRN 443

  Fly   566 ATSSHHGSFGKASISSGQLS 585
            .:.|.:.: |:.....||.|
 Frog   444 QSGSDNET-GQPVRRKGQCS 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yrtNP_650291.1 B41 60..250 CDD:214604 99/197 (50%)
FERM_N 62..124 CDD:286467 26/69 (38%)
FERM_M 143..250 CDD:278785 62/106 (58%)
FERM_C_NBL4_NBL5 246..339 CDD:270007 41/92 (45%)
FA 352..392 CDD:285894 15/39 (38%)
PHA03255 771..>924 CDD:165513
epb41l4aNP_001006910.1 B41 13..211 CDD:214604 99/197 (50%)
FERM_C_NBL4_NBL5 207..296 CDD:270007 41/92 (45%)
FA 311..354 CDD:370090 16/47 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D241659at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23280
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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