DRSC/TRiP Functional Genomics Resources

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Protein Alignment yrt and Farp1

DIOPT Version :10

Sequence 1:NP_650291.1 Gene:yrt / 41656 FlyBaseID:FBgn0004049 Length:972 Species:Drosophila melanogaster
Sequence 2:NP_001100757.1 Gene:Farp1 / 306183 RGDID:1305346 Length:1049 Species:Rattus norvegicus


Alignment Length:541 Identity:169/541 - (31%)
Similarity:263/541 - (48%) Gaps:77/541 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 GAITSGGSSQI----KPQRIVVNKNKIDCRVILLDNTDLSIELSKKALGSFLYEQVFYALDIIEK 96
            ||..:.|.|.:    ||......| .:..::.:||:|..:.|:.::|.|..|::.|...|:::|.
  Rat    15 GAPENSGISTLERGQKPPPTPSGK-LMTVKIQMLDDTQEAFEVPQRAPGKVLFDAVCNHLNLVEG 78

  Fly    97 DYFGLQFMDANHVKHWLDPTKPIKKQVKIGPPYTFRLKVKFYSSEPNTLREELTRYLFFLQLKQD 161
            |||||:|.|...:..|||..|||.||::.......:..|||:..:...|:||||||||.||:|||
  Rat    79 DYFGLEFPDHRKIVVWLDLLKPIVKQIRRPKHVLVKFVVKFFPPDHTQLQEELTRYLFALQVKQD 143

  Fly   162 LLEGRLDCPEDKATELCALALQSELGDYD---NQEHSAATVSEFRFVPEQTEDLEIAILDEYKTC 223
            |.:|||.|.:..|..|.:..:|||:||:|   ::||.|..    ::||:| :.||..|::.:.:.
  Rat   144 LAQGRLTCNDTSAALLISHIVQSEIGDFDEALDREHLAKN----KYVPQQ-DALEDKIVEFHHSH 203

  Fly   224 RGLTPAQAETAFLNKAKWLDMYGVDMHTVLGKDGCEYHLGLTPTGILVFERDQKIGLFFWPKISK 288
            .|.|||:::...|..|:.|:|||:.:|....::|.:.:|.:..||||||:...||..|.|.|:.|
  Rat   204 IGQTPAESDFQLLEVARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWAKVRK 268

  Fly   289 LDFKKKKLTLIVIEDDDEGREQEHTFVFRLYNEKACKHLWKCAVEHHTFFRLRAPVKGPSARQNF 353
            |.||:|:. ||.:..|.....|: |..|.:.....||..||..||||.||||....| |..:...
  Rat   269 LSFKRKRF-LIKLRPDVNSSYQD-TLEFLMAGRDFCKSFWKICVEHHAFFRLFEEPK-PKPKPVL 330

  Fly   354 FRMGSRFRYSGRTEFQTTQ--QSRARRTVQFERRPSQRFASRQSHLLRERQKASQEAAVSAVASV 416
            |..||.||:||||:.|...  :....:.|||||:.|:..::|              :.||...:.
  Rat   331 FSRGSSFRFSGRTQKQVLDYVKEGGHKKVQFERKHSKIHSTR--------------SLVSQPTAP 381

  Fly   417 NARAAAAAAAAAASQSPAPATPLVSSQVSTPTPNNDNNNDAFDSLISTDQFITVTPSPSVLTVIQ 481
            |:.        ...|||..|:  ::....|.:|:..:...|.::.:     .|:.|.|.....:.
  Rat   382 NSE--------VPKQSPQSAS--LTFGEGTESPSAQSCQQAKETKV-----CTLEPGPRQSPALS 431

  Fly   482 NSAIIEPDAACSGSISSSSQAAA------NFASLGRNSLKSNFSNEDPAYSKIGSI--------- 531
            .|.        |||.::...|||      :....|::.::.  ||..|.....||:         
  Rat   432 KSP--------SGSKAADGTAAAAPPEEEDEEEGGKDGIRP--SNPQPPQPSTGSLTGSPHLSEL 486

  Fly   532 -----GKASGLTVKLDPDYTP 547
                 |.|:...|.|.|:.:|
  Rat   487 SINSQGGAAPANVTLSPNLSP 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yrtNP_650291.1 B41 60..250 CDD:214604 74/192 (39%)
FERM_C_NBL4_NBL5 246..339 CDD:270007 35/92 (38%)
FA 352..393 CDD:462582 16/42 (38%)
PHA03255 771..>924 CDD:165513
Farp1NP_001100757.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 6/21 (29%)
B41 41..230 CDD:214604 74/193 (38%)
FERM_C_FARP1-like 217..337 CDD:270014 47/122 (39%)
FA 329..372 CDD:462582 16/42 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..537 37/186 (20%)
RhoGEF 545..732 CDD:238091
PH1_FARP1-like 757..865 CDD:269928
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 866..908
PH2_FARP1-like 935..1032 CDD:270055
Blue background indicates that the domain is not in the aligned region.

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