DRSC/TRiP Functional Genomics Resources

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Protein Alignment yrt and Frmd6

DIOPT Version :9

Sequence 1:NP_650291.1 Gene:yrt / 41656 FlyBaseID:FBgn0004049 Length:972 Species:Drosophila melanogaster
Sequence 2:XP_006240213.1 Gene:Frmd6 / 257646 RGDID:727810 Length:622 Species:Rattus norvegicus


Alignment Length:649 Identity:128/649 - (19%)
Similarity:227/649 - (34%) Gaps:160/649 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 RIVVNKNKI--DCR---VILLDNTDLSIELSKKALGSFLYEQVFYALDIIEKDYFGLQFMDAN-H 108
            ::..:.||:  |.|   :.|.::..:||.::.|.|...|..||...|.:.:...|||..:..| |
  Rat     3 KLTFHNNKVMQDRRRVCIFLPNDKSVSIIINVKILCHQLLVQVCDLLRLKDSHLFGLSVIQNNEH 67

  Fly   109 V-------------KHWLDPTKPIKKQV------KIGPPYTFRLKVKFYSSEPNTLREELTRYLF 154
            |             |.|......:::..      :.|||.....:|::|......:.:.:.||.:
  Rat    68 VYMELSQKLYKYCPKEWKKEASKVRQYEVTWGIDQFGPPMIIHFRVQYYVENGKLISDRIARYYY 132

  Fly   155 FLQLKQDLLEGRLDCPEDKATELCALALQSELGDYDNQEH-----------SAATVSE------F 202
            :..|::.:|..:....|:....|.|.|||::||::..:.|           .|..||:      .
  Rat   133 YWHLRKQVLHSQCVLREEAYFLLAAFALQADLGNFKRKVHHGDYFEPEAYFPAWVVSKRGKDYIL 197

  Fly   203 RFVPEQTEDLEIAILDEYKTCRGLTPAQAETAFLNKAKWLDMYGVDMHTVLGKDGCEYH----LG 263
            :.:|....| :.|          ||.::|...::.:|..||...:..:. |.||..|..    ||
  Rat   198 KHIPNMHRD-QFA----------LTASEAYLKYIKEAVRLDDVAIHYYR-LYKDKREVEGSLTLG 250

  Fly   264 LTPTGILVF----ERDQKIGLFFWPKISKLDFKKKKLTLIVIEDDDEGREQEHTFVFRLYNEKAC 324
            ||..||.:|    |..|.:..|.|..:.||.|..||..::     .:|.......|:........
  Rat   251 LTMRGIQIFQNLEEEKQLLYDFPWTNVGKLVFVGKKFEIL-----PDGLPSARKLVYYTGCPTRS 310

  Fly   325 KHLWKCAVEHHTFFRLRAPVKGPSARQNFFRMGSRFRYSGRTEFQTTQQSRARRTVQFERRPSQR 389
            :||.:.....|..:....||.....:|.......::|           :|.....:..:..|   
  Rat   311 RHLLQLLSNSHRLYMNLQPVLRHLRKQEENEEKKQYR-----------ESYISDNLDLDMDP--- 361

  Fly   390 FASRQSHLLRERQKASQEAAVSAVASVNARAAAAAAAAAASQSPAPATPLVSSQVSTPT-PNNDN 453
                    |.:|.:||.    |:..|:..:..:..:.|:.|.|.       :|.:.|.| |.:..
  Rat   362 --------LEKRSRASG----SSAGSMKHKRLSRHSTASHSSSH-------TSGIETDTKPRDPG 407

  Fly   454 NNDAFDSLISTDQFITVTPSPSVLTVIQNSAIIEPDAACSGSISSSSQAAANFASLGRNSLKSNF 518
            ..|.:...:...:..|                      ||...|..|...:...|.|::.|:.: 
  Rat   408 PEDGYSGSVMHRKLKT----------------------CSSMTSHGSSHTSGVESGGKDRLEED- 449

  Fly   519 SNEDPAYSKIGSIGKASGLTVKLDP-DYTPPYSPNATKNFDETNP-----------FRNATSSHH 571
            |.:|.....:.            || |..|     .|:...|.:|           .....:.|.
  Rat   450 SQDDEIEMLVD------------DPRDLEP-----MTEESLEVSPEMCIYITQDMLLSRKLNGHS 497

  Fly   572 GSFGKASISSGQLSVKSGLSDKDRELDSLLKSIVKDPSPSVLANEAINDANSIRVTINKTFDMD 635
            |...|...||...|.::.:..:.:..|||.::|.:.|..|       .|.:|:.:...:.:..|
  Rat   498 GLIVKEISSSTSSSSETVVKLRGQSTDSLPQTICRKPKTS-------TDRHSLSLDDIRLYQKD 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yrtNP_650291.1 B41 60..250 CDD:214604 48/229 (21%)
FERM_N 62..124 CDD:286467 17/81 (21%)
FERM_M 143..250 CDD:278785 25/123 (20%)
FERM_C_NBL4_NBL5 246..339 CDD:270007 25/100 (25%)
FA 352..392 CDD:285894 3/39 (8%)
PHA03255 771..>924 CDD:165513
Frmd6XP_006240213.1 B41 20..234 CDD:214604 47/224 (21%)
FERM_N 20..82 CDD:286467 15/61 (25%)
FERM_M 123..234 CDD:278785 25/121 (21%)
FERM_C_FRMD1_FRMD6 227..335 CDD:270006 28/113 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345155
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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