DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir87a and grik4

DIOPT Version :9

Sequence 1:NP_650290.2 Gene:Ir87a / 41654 FlyBaseID:FBgn0038153 Length:796 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:268 Identity:44/268 - (16%)
Similarity:98/268 - (36%) Gaps:48/268 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 GKLKLSGIEYEMVQTIAERLHVSIEMQ----------GENSNLYHLFQQLIDGEIEMIVGGIDED 459
            |..:..|...:|::.:|:.|.....::          |.|.....:..:||..:.::.|..:...
Zfish   440 GNDRYEGFCVDMLKELADILKFKYRIRLVGDGVYGVPGANGTWTGMVGELISRKADLAVAALTIT 504

  Fly   460 PSISQFVSSSIPYHQDELTWCVA-----RAKRRHGFFNFVATFNADAGFLIGIFVVTCSLVVWLA 519
            ....:.:..|.|:    :|..::     ...||.|:|:|:..|:......:.:..:..|.|::|.
Zfish   505 AEREKVIDFSKPF----MTLGISIMYRVHIGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLV 565

  Fly   520 QRVSGFQLRN------------LNGY-------FPTCLRVLGILLNQAIPAQDFPITLRQLFALS 565
            .|::.::..|            :|.|       ||     :|..:.|........::.|.:..:.
Zfish   566 ARLTPYEWYNPHPCLKGRCSLLINQYSLGNSFWFP-----VGGFMQQGSTIAPRALSTRCVSGVW 625

  Fly   566 FLMGFFFSNTYQSFLISTLTTPRSSYQIHTLQEIYSNKMTVMGTSEHVRHLNKDGEIFKYIR-EK 629
            :.......::|.:.|.:.||..|....|.::.::........||    .|.......|:..| :.
Zfish   626 WAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGT----MHGGSTMTFFQNSRYQT 686

  Fly   630 FQMCYNLV 637
            :|..:|.:
Zfish   687 YQRMWNFM 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir87aNP_650290.2 Periplasmic_Binding_Protein_Type_2 408..>475 CDD:304360 11/76 (14%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 44/268 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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