DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yellow-e2 and Rgn

DIOPT Version :9

Sequence 1:NP_650289.2 Gene:yellow-e2 / 41652 FlyBaseID:FBgn0038151 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_113734.1 Gene:Rgn / 25106 RGDID:3560 Length:299 Species:Rattus norvegicus


Alignment Length:168 Identity:38/168 - (22%)
Similarity:55/168 - (32%) Gaps:60/168 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 DQVLRNGRYNPDSPIPIDIDVYYPPNGGPPRHFV------TSPRFGQGVPFSLGYVTNVQRENGS 119
            |:..:|.|:|         |....|.|   |:|.      |:|..             ::|..||
  Rat    94 DEDKKNNRFN---------DGKVDPAG---RYFAGTMAEETAPAV-------------LERHQGS 133

  Fly   120 EIQAYPSYQWHSSHGANCDGLTSVYRVHID-ACGQMWVLDSGEIEFVQHCAPQVMVF--DLATDQ 181
            ....:|.   ||         ...|...:| :.|..|.||.....::...:..|..|  ||.|.|
  Rat   134 LYSLFPD---HS---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYTVDAFDYDLPTGQ 186

  Fly   182 LIHRYRLPETSYKAKVSRFVNIFADIRDPPPSGQCKDV 219
            :.:|    .|.||.:....:          |.|.|.||
  Rat   187 ISNR----RTVYKMEKDEQI----------PDGMCIDV 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yellow-e2NP_650289.2 MRJP 141..434 CDD:281074 21/82 (26%)
RgnNP_113734.1 SGL 16..264 CDD:285626 38/168 (23%)
NHL 166..>237 CDD:302697 15/59 (25%)
WD40 repeat 203..239 CDD:293791 5/8 (63%)
NHL repeat 203..237 CDD:271320 5/8 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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