DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yellow-e3 and Rgn

DIOPT Version :9

Sequence 1:NP_650288.1 Gene:yellow-e3 / 41651 FlyBaseID:FBgn0038150 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_113734.1 Gene:Rgn / 25106 RGDID:3560 Length:299 Species:Rattus norvegicus


Alignment Length:172 Identity:40/172 - (23%)
Similarity:55/172 - (31%) Gaps:52/172 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 HQWTNLSLGDDLSKGNRFLPVDVDIEYGDEGRHRTFLTIPRLGMATPFTLATVIAEHNEL----V 86
            ||.:..||..|.|....|..||:.........|:.|..|..|..       ||.|...:|    :
  Rat   130 HQGSLYSLFPDHSVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY-------TVDAFDYDLPTGQI 187

  Fly    87 ENPRLEPYPNEEWHVPPNNCSGITSAIRTYIDECWRLWVV--DSGQVNSLQLCPPQILTFDLVKD 149
            .|.|......::..:|...|          ||...:|||.  :.|:|  ::|.|........|| 
  Rat   188 SNRRTVYKMEKDEQIPDGMC----------IDVEGKLWVACYNGGRV--IRLDPETGKRLQTVK- 239

  Fly   150 ELVQRHALPPDSYIPSVSIFTALVVDLAERGTPNRCVGGRAY 191
                   ||.|.                   |.:.|.||:.|
  Rat   240 -------LPVDK-------------------TTSCCFGGKDY 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yellow-e3NP_650288.1 MRJP 110..397 CDD:281074 19/84 (23%)
RgnNP_113734.1 SGL 16..264 CDD:285626 40/172 (23%)
NHL 166..>237 CDD:302697 19/89 (21%)
WD40 repeat 203..239 CDD:293791 11/47 (23%)
NHL repeat 203..237 CDD:271320 11/45 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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