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Protein Alignment CG8870 and C1s

DIOPT Version :9

Sequence 1:	NP_731802.1	Gene:	CG8870 / 41645	FlyBaseID:	FBgn0038144	Length:	356	Species:	Drosophila melanogaster
Sequence 2:	NP_620255.2	Gene:	C1s / 192262	RGDID:	619983	Length:	694	Species:	Rattus norvegicus

Alignment Length:	320	Identity:	85/320 - (26%)
Similarity:	116/320 - (36%)	Gaps:	101/320 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    64 CCPKWETYLPHDTCGQSRRKPTK----------GKIPALNEFPWMAMLLYGNKNNLSQKLVPKCG 118
            |.|         .||    .||:          |....:..|||.   :|...        |:.|
  Rat   427 CIP---------VCG----VPTEPFKVQQRIFGGYSTKIQSFPWQ---VYFES--------PRGG 467

  Fly   119 GSLINNWYVLTAAHCVEYPFMDYPYA----LKTVRLGEHNTSTNPDRAIVNGRRQYAPLYMEIEV 179
            |:||:.::||||||.||.......|.    ||..||      .|..|.|               .
  Rat   468 GALIDEYWVLTAAHVVEGNSDPVMYVGSTLLKIERL------RNAQRLI---------------T 511

  Fly   180 DQIITH------EQFNRGRRLINDIALVRLKFPVRYTRAIQPICLPRAQK--------LAAHKRK 230
            :::|.|      :..|......||||||:||.||:....:.|||||....        |..
  Rat   512 ERVIIHPSWKQEDDLNTRTNFDNDIALVQLKDPVKMGPTVAPICLPETSSDYNPSEGDLGL---- 572

  Fly   231 FQASGWPDMGQGIASEVLLRSF------------IAERHPDVCKSNYDFNLGSQICAGGLDGNDT 283
              .||| ...:...:.:.||..            :...:|....::|.|. .:.||||. .|.|:
  Rat   573 --ISGW-GRTENRTNVIQLRGAKLPITSLEKCQQVKVENPKARSNDYVFT-DNMICAGE-KGVDS 632

  Fly   284 SPGDSGGPLMETVIRGKVTLTYAAGIISYGQKPCVLKTCKP-AFYTKTSYFFEWIKSKLQ 342
            ..|||||.....|...|....|.||::|:|:|      |.. ..|||...:.:||...:|
  Rat   633 CEGDSGGAFALPVPNVKDPKFYVAGLVSWGKK------CGTYGIYTKVKNYVDWILKTMQ 686

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.