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Protein Alignment CG8773 and Lnpep

DIOPT Version :10

Sequence 1:	NP_650273.2	Gene:	CG8773 / 41634	FlyBaseID:	FBgn0038135	Length:	994	Species:	Drosophila melanogaster
Sequence 2:	NP_001106874.1	Gene:	Lnpep / 171105	RGDID:	621752	Length:	1025	Species:	Rattus norvegicus

Alignment Length:	1003	Identity:	336/1003 - (33%)
Similarity:	513/1003 - (51%)	Gaps:	91/1003 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly    41 QEKLDLLEAGYTSTAAPTTASTANPGSTASPGSTAEPGSTAEPGSTAEPGSTAS----------- 94
            :.::|..|..|.|:|.....|..|..|.....:|   |....|..|....|..:
  Rat    60 EHEMDEDEEDYESSAKLLGMSFMNRSSGLRNSAT---GYRQSPDGTCSVPSARTLVICVFVIVVA 121

  Fly    95 ----------PGSTVTPGSTASTSEPGTTASP----EKI----DYRLPGTLKPTHYDLYLFPNIE 141
                      |..|.|......|::......|    .|:    ..|||..:.|..|:|.|.||:.
  Rat   122 VSVIMVIYLLPRCTFTKEGCHKTNQSAELIQPIATNGKVFPWAQIRLPTAIIPQRYELSLHPNLT 186

  Fly   142 TGEFSGQETITITVEEATDQIVLHSLNLNISSVSIMNTGSD---TLEILETTVDAVREFLIFQLN 203
            :..|.|..||::...:.|..|:|||...|||||:.|:..|.   .:||||.   ...|.:.....
  Rat   187 SMTFRGSVTISLQALQDTRDIILHSTGHNISSVTFMSAVSSQEKQVEILEY---PYHEQIAVVAP 248

  Fly   204 EPLTKGRTVRLHIGFEGSMANKIVGLYSSSYVKEDETRKWIATSKFEPTYARQAFPCFDEPALKA 268
            |.|..|....|.|.:..:::|...|.|..:|..:...:|..|.::|||..||.|||||||||.||
  Rat   249 ESLLTGHNYTLKIEYSANISNSYYGFYGITYTDKSNEKKNFAATQFEPLAARSAFPCFDEPAFKA 313

  Fly   269 EFTITLVHPSGEDYH-ALSNMNVDSSV--SQGAFQEVTFAKSVPMSTYLACFIVSDFAYKQVSID 330
            .|.|.:..   :::| |||||...|||  .:|..|: .|::||.|||||..|||.:.  :.:|.|
  Rat   314 TFIIKITR---DEHHTALSNMPKKSSVPTEEGLIQD-EFSESVKMSTYLVAFIVGEM--RNLSQD 372

  Fly   331 TKGIGETFSMSVYATPEQLDKVDLAVTIGKGVIEYYIDYFQIAYPLPKLDMAAIPDFVSGAMEHW 395
            ..|.    .:||||.||::|:|..|:.....::|:|.:||:|.|||.|||:.|||||.:||||:|
  Rat   373 VNGT----LVSVYAVPEKIDQVYHALDTTVKLLEFYQNYFEIQYPLKKLDLVAIPDFEAGAMENW 433

  Fly   396 GLVTYRETSLLYDEATSSATNKQRIASVIAHEFAHMWFGNLVTMNWWNDLWLNEGFASFVEYLGV 460
            ||:|:||.:||||.||||..:::.:..:||||.||.||||||||.||||||||||||:|:||..|
  Rat   434 GLLTFREETLLYDNATSSVADRKLVTKIIAHELAHQWFGNLVTMQWWNDLWLNEGFATFMEYFSV 498

  Fly   461 DAVYPEWKMRDQFTVSTLHSVLTLDGTLGSHPIIQTVENPDQITEIFDTITYSKGSSLVRMLEDF 525
            :.::.|....:.| :......:..|....||||..:|::.:||.|:||:::|.||:||:.||:.:
  Rat   499 EKIFKELNSYEDF-LDARFKTMRKDSLNSSHPISSSVQSSEQIEEMFDSLSYFKGASLLLMLKSY 562

  Fly   526 LGETTFRQAVTNYLNEYKYSTAETGNF---FTEIDKLELGYNVTEIMLTWTVQMGLPVVTIEKVS 587
            |.|..|:.|:..||:.:.|:..::.:.   |.|:....|  :|.::|.|||:|.|.|:||::: .
  Rat   563 LSEDVFQHAIILYLHNHSYAAIQSDDLWDSFNEVTGKTL--DVKKMMKTWTLQKGFPLVTVQR-K 624

  Fly   588 DTEYKLTQKRFLSN--PNDYDADHEPSEFNYRWSIPITYFTSSDSVVQ-RLWFYHDQSEITVTVP 649
            .||..|.|:||..:  |...|:|     .::.|.|||:|.|...:..: |.....|:....:.:.
  Rat   625 GTELLLQQERFFPSMQPEIQDSD-----TSHLWHIPISYVTDGRNYSEYRSVSLLDKKSDVINLT 684

  Fly   650 AAVEWIKFNADQVGYYRVNYDTDLWNDLADQLVVQPSAFGSVDRAHLLNDAFALADSTQLPYATA 714
            ..|:|:|.|.:..|||.|:|..|.|..|.:||...|......|||:|:|:.|.||...::|...|
  Rat   685 EQVQWVKVNTNMTGYYIVHYAHDGWAALINQLKRNPYVLSDKDRANLINNIFELAGLGKVPLQMA 749

  Fly   715 FELTRYLDKETDYVPWSVAASRLTSLKRTLYYTSTYAKYKKYATALIEPIYTAL-------TWTV 772
            |:|..||..||...|.:.|..: |.|   :|.......:...::.|:..::..|       |||.
  Rat   750 FDLIDYLRNETHTAPITEALFQ-TDL---IYNLLEKLGHMDLSSRLVTRVHKLLQNQIQQQTWTD 810

  Fly   773 GEDHLDNRLRVTALSAACSLGLESCLTEAGEQFNAWLAK--PEDRPKADVRETVYYYGIQSVGSQ 835
            ........||...|..||:..||:|.|.|.:.|:.|:|.  .:..| .||..||:..|.:   ::
  Rat   811 EGTPSMRELRSALLEFACAHSLENCTTMATKLFDGWMASNGTQSLP-TDVMTTVFKVGAR---TE 871

  Fly   836 EDWDAVWELFVNESDASEKSKLMYGLS----AIQIPWILQRYIDLAWNEEYVRGQDYFTCLTYIS 896
            :.|..::.::.:....:||.|::..|:    |.::.|:::..:|    .:.:|.|.....:..:.
  Rat   872 KGWLFLFSMYSSMGSEAEKDKILEALASSADAHKLYWLMKSSLD----GDIIRTQKLSLIIRTVG 932

  Fly   897 ANPVGESLVWDYVRENWQRLVDRFGLNERYLGNLIPSITARFSTQTKLEEMEQFFAKYPEAGAGT 961
            ....|..|.||:|:|||.:||.:|.|....:.:::...|..|||:|.|.|:::||....||....
  Rat   933 RQFPGHLLAWDFVKENWNKLVHKFHLGSYTIQSIVAGSTHLFSTKTHLSEVQEFFENQSEATLQL 997

  Fly   962 AARVRALETVKNNIVWLAENLEGVDAWL 989
            .....|.|.::.||.|:|.||:.:..||
  Rat   998 RCVQEAFEVIELNIQWMARNLKTLTLWL 1025

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.