DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8483 and vap-2

DIOPT Version :9

Sequence 1:NP_650264.1 Gene:CG8483 / 41623 FlyBaseID:FBgn0038126 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_001300377.1 Gene:vap-2 / 181273 WormBaseID:WBGene00011462 Length:507 Species:Caenorhabditis elegans


Alignment Length:196 Identity:62/196 - (31%)
Similarity:91/196 - (46%) Gaps:34/196 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 AFACNGKIIASGITAEERSIILQEHNRLRQIVATG-RYPG-----QPGAENMREIVWDDELAARA 78
            :|.|:..:: |.:|   |:..|::||..|..:|.| .:.|     ||.|..|.::.:|..|...|
 Worm   303 SFQCDNSLV-SDVT---RNFTLEQHNFYRSRLAKGFEWNGETNTSQPKASQMIKMEYDCMLERFA 363

  Fly    79 QKWADNCQFRHDPHRTINRFTMGQNLAIIWSTAPLDADDGD-FPSRIQSWFNEVQKYSFG----- 137
            |.||:||.|.|..|  ..|...||||.:...:.|   |... ..:.::.|:.|:::  ||     
 Worm   364 QNWANNCVFAHSAH--YERPNQGQNLYMSSFSNP---DPRSLIHTAVEKWWQELEE--FGTPIDN 421

  Fly   138 ----DAWSPK---TGHYSQLVWGETSLVGCGYAEYKDTSKYNKLYVCNYGPGGNVVGYNPYEVGK 195
                :.|..|   .|||:|:.|..|..:|||.|.....|    ..||:|||.||......||:|.
 Worm   422 VLTPELWDLKGKAIGHYTQMAWDRTYRLGCGIANCPKMS----YVVCHYGPAGNRKNNKIYEIGD 482

  Fly   196 P 196
            |
 Worm   483 P 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8483NP_650264.1 SCP_euk 37..180 CDD:240180 49/161 (30%)
vap-2NP_001300377.1 SCP 104..253 CDD:214553
SCP 315..468 CDD:214553 51/166 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 1 1.000 - - FOG0000604
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100188
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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