DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8141 and RMA1

DIOPT Version :9

Sequence 1:NP_731776.1 Gene:CG8141 / 41622 FlyBaseID:FBgn0038125 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_001319862.1 Gene:RMA1 / 825654 AraportID:AT4G03510 Length:249 Species:Arabidopsis thaliana


Alignment Length:116 Identity:39/116 - (33%)
Similarity:56/116 - (48%) Gaps:19/116 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 CNECNQYVRGGVITICGHLFCWTCL--WPKLSGTA-------QPRCPCCQRHLLMYEDIMPFHGE 140
            ||.|...|:..|:|:|||||||.|:  |..:...:       ..:||.| :..:.:..::|.:|.
plant    48 CNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVC-KSKVSHSTLVPLYGR 111

  Fly   141 GPNARQED--NNVPAQP-GSVPR---PTGLYLSDTDFPCWFAV--NDPVDG 183
            |....||:  |:||.:| |.|.|   |...|.| ||......|  |.|.:|
plant   112 GRCTTQEEGKNSVPKRPVGPVYRLEMPNSPYAS-TDLRLSQRVHFNSPQEG 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8141NP_731776.1 zf-C3HC4_2 85..124 CDD:290634 17/47 (36%)
RMA1NP_001319862.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5574
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000717
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12313
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.870

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