DRSC/TRiP Functional Genomics Resources

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Protein Alignment 2mit and AT4G33970

DIOPT Version :9

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_195123.1 Gene:AT4G33970 / 829543 AraportID:AT4G33970 Length:699 Species:Arabidopsis thaliana


Alignment Length:697 Identity:127/697 - (18%)
Similarity:227/697 - (32%) Gaps:242/697 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLSRQDVGRLSYQSIHRMLRDENEPDSFRGELR 80
            ||.:::|:...|:..|.|  |.:....:|  |.|:..|.|.|              ||    ::.
plant    30 LLFFSFLSSSFVSFALTD--TEAAFIVQR--QLLTLPDNGEL--------------PD----DIE 72

  Fly    81 YQQKRHKRELELNAP-AN-KLNLTHRDLRT---------FNSTGGQWKG---------------- 118
            |       |::|.|. || :|...:..|:.         ||:| |.|.|                
plant    73 Y-------EVDLKATFANTRLKRAYIALQAWKKAIFSDPFNTT-GNWHGPHVCGYTGVVCAPALD 129

  Fly   119 --DFQVITAMDLSSNQLESLSLDNFNQLRQLDLGNNSLEVIPLSLADTNMSLPFVTLDLSCNKFS 181
              |..|:..:||                       |..::.....|:..:........|:.|:|.
plant   130 DSDVTVVAGVDL-----------------------NGADIAGHLPAELGLMTDVAMFHLNSNRFC 171

  Fly   182 QISTSFFAQRLPQLKNLNLAHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYL 246
            .|....| ::|..:...::::|..:.    .|.|::                    |:.|:::|.
plant   172 GIIPKSF-EKLKLMHEFDVSNNRFVG----PFPNVV--------------------LSWPDVKYF 211

  Fly   247 DLSHNRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTGLCQVPAALAQS 311
            ||..|...|      |..|:|..                      |||||               
plant   212 DLRFNDFEG------QVPPELFK----------------------KELDA--------------- 233

  Fly   312 VRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVEDDALGRLE-LLESLFLDRNLLMRVPS 375
               :.|:||...::....:...| ...:..::::.......::|.:: |.|.:|:|.:|....||
plant   234 ---IFLNDNRFTSVIPESLGESP-ASVVTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLGGCFPS 294

  Fly   376 SLPPSLEHLFL---QHNQIMELPPQAFVGLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVE 437
            .: ..|.::.:   ..|..:...|.:||||.:::.:|:|.|:|..|.|                .
plant   295 EI-GKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVP----------------H 342

  Fly   438 SVSQSIVHTLPQLRDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSG--RVDLKTEYLQ 500
            ::.|     ||.|.:|....|..                   :|| .|:.|.|  |.::..:   
plant   343 NICQ-----LPNLVNLTYSYNYF-------------------SGQ-GGSCVPGGSRKEIALD--- 379

  Fly   501 FHNFYENFSSRECGIRKPENDT---------KPPSCSLTRASATLTTTPRSMSKVEKSQEAQATA 556
                    .:|.|...:||..:         :|..||..:.:.. ::||...|.|.|......|.
plant   380 --------DTRNCLASRPEQRSAQECAVVINRPVDCSKDKCAGG-SSTPSKPSPVHKPTPVPTTP 435

  Fly   557 TSVEVAAATAATSEKTGIQATSAAQSTAAATTAEREAIATATSSDTTATPTLAAAAAIQSAGNIP 621
            ........|....:.:.:..|...:.:...||...|      .|...|||       :.....:|
plant   436 VHKPTPVPTTPVQKPSPVPTTPVQKPSPVPTTPVHE------PSPVLATP-------VDKPSPVP 487

  Fly   622 AQLTTKTLRPTETT------SLAQLQRRQQMPGMPAKTTETPAKNLP 662
            ::...|...|.|:.      ..:.:.:|:..|..|..:...|..:.|
plant   488 SRPVQKPQPPKESPQPDDPYDQSPVTKRRSPPPAPVNSPPPPVYSPP 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064 32/230 (14%)
leucine-rich repeat 124..143 CDD:275380 2/18 (11%)
leucine-rich repeat 144..167 CDD:275380 2/22 (9%)
leucine-rich repeat 172..194 CDD:275380 6/21 (29%)
LRR_8 193..253 CDD:290566 9/59 (15%)
leucine-rich repeat 195..218 CDD:275380 3/22 (14%)
leucine-rich repeat 219..242 CDD:275380 1/22 (5%)
LRR_8 241..301 CDD:290566 14/59 (24%)
leucine-rich repeat 243..311 CDD:275380 13/67 (19%)
leucine-rich repeat 312..335 CDD:275380 3/22 (14%)
LRR_8 334..415 CDD:290566 19/84 (23%)
leucine-rich repeat 336..359 CDD:275380 1/23 (4%)
leucine-rich repeat 360..380 CDD:275380 6/19 (32%)
LRR_8 379..460 CDD:290566 19/83 (23%)
LRR_4 379..>415 CDD:289563 10/38 (26%)
leucine-rich repeat 381..404 CDD:275380 7/25 (28%)
leucine-rich repeat 405..449 CDD:275380 8/43 (19%)
AT4G33970NP_195123.1 leucine-rich repeat 160..183 CDD:275380 6/23 (26%)
leucine-rich repeat 184..207 CDD:275380 4/46 (9%)
leucine-rich repeat 208..224 CDD:275380 6/21 (29%)
leucine-rich repeat 229..254 CDD:275380 9/43 (21%)
leucine-rich repeat 255..277 CDD:275380 1/21 (5%)
LRR_8 276..336 CDD:290566 17/60 (28%)
leucine-rich repeat 278..301 CDD:275380 8/23 (35%)
leucine-rich repeat 302..325 CDD:275380 6/22 (27%)
leucine-rich repeat 326..349 CDD:275380 8/43 (19%)
alpha-crystallin-Hsps_p23-like <409..>514 CDD:294116 19/118 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 76 1.000 Inparanoid score I2413
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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