DRSC/TRiP Functional Genomics Resources

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Protein Alignment 2mit and lrrc4.1

DIOPT Version :10

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_005164844.1 Gene:lrrc4.1 / 565021 ZFINID:ZDB-GENE-041210-129 Length:858 Species:Danio rerio


Alignment Length:896 Identity:201/896 - (22%)
Similarity:315/896 - (35%) Gaps:212/896 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 DLSCNKFSQISTSFFAQR--------LPQ-LKNLNLAHNELLNISRESFYNLLELQTLVLSHNNI 229
            |.|||  :|:|.....:|        :|. .::|||..|.:.::..:||.||..|:.|.|..|.|
Zfish    47 DCSCN--NQLSKVVCTRRGLTRVPPGIPSTTRHLNLMENAIESVQVDSFRNLHHLEVLQLGRNAI 109

  Fly   230 SDIDYETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKEL 294
            ..|:...|..|.||..|:|..|||:                              .|.|.:.:.|
Zfish   110 RQIEVGAFSGLTNLNTLELFDNRLT------------------------------VVPSGAFEYL 144

  Fly   295 DASGTGLCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSR-IAQVEDDALGRLE 358
                           ..:|.|.|.:|.:::|.....:..|.|..|||...| :..:.|.|...|.
Zfish   145 ---------------SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELRKLEYISDGAFEGLV 194

  Fly   359 LLESLFLDR-NLLMRVPSSLP-PSLEHLFLQHNQIMELPPQAFVGLVNLQTLDLSNNRLIFLPPL 421
            .|:.|.|.. |:...:|:..| ..||.|.:..|...|:.|.:|.||.:|:.|.:.|:::..:...
Zfish   195 NLKYLNLGMCNIRGEMPNFTPLVGLEELEISENLFPEIKPGSFRGLSSLKKLWIMNSQIGLIERN 259

  Fly   422 S---LPKLLTLNLESSGVESVSQSIVHTLPQLRDLLLEDNPIKCS-DLLGIAEWAS---PCRSVD 479
            :   |..|:.|||..:.:.|:...:...|..|.:|.|..||..|. |.|.:|.|..   |..|..
Zfish   260 AFDDLASLVELNLAHNNLSSLPHDLYTPLKYLVELHLHHNPWNCGCDSLWLARWLREYIPTNSTC 324

  Fly   480 AGQSNG-ASVSGR--VDL---KTEYLQFHNFYENFSSRECGI---RKPENDTKPPSCSLTR---A 532
            .|:.:. |.:.||  |:|   .|..:|....:...:.|:..|   |..|...:..:.|..|   .
Zfish   325 CGRCHSPAHMRGRQLVELDRGDTGAMQCSAPFIADAPRDLNISAERVAELKCRTAAMSAVRWLLP 389

  Fly   533 SATLTTTPRSMSKVEKSQEAQATATSV---EVAAATAATSEKTGIQATSAAQSTAAA-------- 586
            :.|:.|...|..::....:.....::|   :....|...|...|....||..:.:||        
Zfish   390 NGTILTHASSHPRLTVLNDGTLNFSNVLAGDTGMYTCMVSNAAGNSNASAYLNVSAAELNTSNLS 454

  Fly   587 --TTAEREAIA---------TATSSDTTATPTLAAAAAIQSAGNIPAQLTTKT--LRPTETTSLA 638
              ||...|.::         |.|::...:|.|.|:.:..|     |..::|.|  |:.|:|..  
Zfish   455 YFTTVTVEVLSPTSEMPKPKTTTTTAGASTTTTASPSVFQ-----PVFISTPTVLLQSTDTPP-- 512

  Fly   639 QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATATTEI-----------NSDK 692
              .|...:||....|.:.|.....||.:...||.: |:....|.|....|           :..:
Zfish   513 --SRPSVIPGSKVTTGKPPNPASTSLDEVMKTTKI-IIGCFVAVTLLAAIMLIVFYKLRKRHQQR 574

  Fly   693 PTNISGATKTV---------ATSAAEIATPPAIEVPQ-----TILAGKKSDKMPADKAHETLLKY 743
            .|..|..|..:         :.|||.||....:.:|:     :|.....:.|.  |..::..|:|
Zfish   575 STVASARTVEIIPVDEELPPSASAANIADEGQLSLPEIRNHNSIYKADYTHKF--DYGYKPKLEY 637

  Fly   744 PTRDTSGQVATTPHK-HATLQLH-VKDRHLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSEV 806
            .|           || .....:| .|..:....|    |.|.:.   :..|...:..:.|...:.
Zfish   638 ST-----------HKPKQDFSIHQPKSDYNTYKP----KADYMY---QPTLEYSSQKLTDYSHKS 684

  Fly   807 LDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKGHKKKPSLSIKKMTYSTKHAAKTVEDMAA 871
            |.....|:..||..::..         .|..|...|.|..||..|..|..|... .:||...|  
Zfish   685 LPDYHVHKKPEQSPYKHG---------YGTHKPDYKSHTPKPDFSPFKTEYGVP-KSKTDYSM-- 737

  Fly   872 TSKTPQHQHSSVNTPKEAAPEEL---STFAQLKA-YV-------ELKSESKPE------HLMDQR 919
              ..|:..:|...|.....|:.:   :.::.||| ||       :.|.:..|.      |.||..
Zfish   738 --PKPKPDYSPFKTDSFFKPDYIAFKAEYSPLKAEYVSRDFSPHKYKKDYSPHNVDYSPHKMDYS 800

  Fly   920 EENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRSNRSGQLRP 970
            .......|...||                  |    ...|..||..|...|
Zfish   801 TMKPKYNTYKPPG------------------H----SAKWTESNSIGNSLP 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR <106..458 CDD:443914 76/298 (26%)
leucine-rich repeat 124..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 172..194 CDD:275380 7/27 (26%)
leucine-rich repeat 195..218 CDD:275380 8/22 (36%)
leucine-rich repeat 219..242 CDD:275380 8/22 (36%)
leucine-rich repeat 243..311 CDD:275380 9/67 (13%)
leucine-rich repeat 312..335 CDD:275380 5/22 (23%)
leucine-rich repeat 336..359 CDD:275380 8/23 (35%)
leucine-rich repeat 360..380 CDD:275380 6/21 (29%)
leucine-rich repeat 381..404 CDD:275380 9/22 (41%)
leucine-rich repeat 405..449 CDD:275380 10/46 (22%)
lrrc4.1XP_005164844.1 LRRNT 43..72 CDD:396168 7/26 (27%)
leucine-rich repeat 54..73 CDD:275380 2/18 (11%)
leucine-rich repeat 75..98 CDD:275380 8/22 (36%)
LRR 78..>300 CDD:443914 68/266 (26%)
leucine-rich repeat 99..122 CDD:275380 8/22 (36%)
leucine-rich repeat 123..146 CDD:275380 9/67 (13%)
leucine-rich repeat 147..170 CDD:275380 5/22 (23%)
leucine-rich repeat 171..195 CDD:275380 8/23 (35%)
leucine-rich repeat 196..218 CDD:275380 6/21 (29%)
leucine-rich repeat 219..242 CDD:275380 9/22 (41%)
leucine-rich repeat 243..266 CDD:275380 4/22 (18%)
leucine-rich repeat 267..288 CDD:275380 5/20 (25%)
LRRCT 299..>339 CDD:214507 13/39 (33%)
Ig 359..443 CDD:472250 15/83 (18%)
Ig strand B 372..376 CDD:409353 1/3 (33%)
Ig strand C 383..387 CDD:409353 1/3 (33%)
Ig strand E 409..413 CDD:409353 0/3 (0%)
Ig strand F 423..428 CDD:409353 1/4 (25%)
Ig strand G 436..439 CDD:409353 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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