DRSC/TRiP Functional Genomics Resources

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Protein Alignment 2mit and lrrc4ca

DIOPT Version :9

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_001018583.1 Gene:lrrc4ca / 553785 ZFINID:ZDB-GENE-050522-533 Length:647 Species:Danio rerio


Alignment Length:672 Identity:158/672 - (23%)
Similarity:239/672 - (35%) Gaps:156/672 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 LDLGNNSLEVIPLSLADTNMSLPFVTLDLSC-NKFSQ-ISTSFFAQRLP-----QLKNLNLAHNE 204
            |.|....|.|..|..|.|..|:      .|| |:||: |.|....:.:|     ..:.|||..|.
Zfish    30 LSLALQLLVVAGLVRAQTCPSV------CSCSNQFSKVICTRRGLRDVPDGISTNTRYLNLQENL 88

  Fly   205 LLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVS 269
            :..|..:||.:|..|:.|.||.|:|.:|:...|..|.||..|:|..|||:        .||:   
Zfish    89 IQVIKVDSFKHLRHLEILQLSKNHIRNIEIGAFNGLANLNTLELFDNRLT--------TIPN--- 142

  Fly   270 LSIAYNPDVGVAMQEFVASWSLKELDASGTGLCQVPAALAQSVRTLKLSDNWLKAINCGDMDSY- 333
                       ...|:::  .||||                          ||:......:.|| 
Zfish   143 -----------GAFEYLS--KLKEL--------------------------WLRNNPIESIPSYA 168

  Fly   334 ----PLLQYLDLSH-SRIAQVEDDALGRLELLESLFLDRNLLMRVPSSLP-PSLEHLFLQHNQIM 392
                |.|:.|||.. .|::.:.:.|...|..|..|.|....|..:|:.:| ..|:.|.:..||:.
Zfish   169 FNRVPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVRLDELEMSGNQLS 233

  Fly   393 ELPPQAFVGLVNLQTLDLSNNRLIFLPPLS---LPKLLTLNLESSGVESVSQSIVHTLPQLRDLL 454
            .:.|.:|.|||:||.|.:.:.::..:...:   |..|:.|||..:.:..:...:...|..|..:.
Zfish   234 IIRPGSFKGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVH 298

  Fly   455 LEDNPIKCS-DLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYL------QFHNFYENFSSRE 512
            |..||..|: |:|.::.|..  ..|.|..|..|..|.....|..|:      .||.:........
Zfish   299 LHHNPWNCNCDILWLSWWLK--EMVPANTSCCARCSSPTSHKGRYIGELDQNYFHCYAPVIVEPP 361

  Fly   513 CGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQEAQATATSVEVAAATAATSEKTG---- 573
            ..:...|.......|.....::....||........:.:.:.:..:......|..|.:.||    
Zfish   362 ADLNVTEGMAAELKCRANSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQDTGTYTC 426

  Fly   574 IQATSAAQSTAAAT----TAEREAIA---TATSSDTTATPTLAAAAAIQSAGNIPAQLTTKTLRP 631
            :.:.||..:||:||    :.|..:.:   |.|...|.|.|........|..|..|:....:||.|
Zfish   427 MVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETTEAPPDEGHPTVQQKNGPTPSSGIWETLPP 491

  Fly   632 TETTSLAQLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILA-------TRDAATATTEIN 689
            :.|                  ||.|.|:...|...|..|..:|:.|       |.|....||:| 
Zfish   492 SFT------------------TTTTTARTPLSTKATDKTYTIPVTAQSDGSLNTLDEVMKTTKI- 537

  Fly   690 SDKPTNISGATKTVATSAAEI-----------------ATPPAIEVPQTILAGKKSDKMPADKAH 737
                  |.|....:...||.:                 |...|||:     .....|.|....|.
Zfish   538 ------IIGCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRAIEI-----INVDEDCMTGGPAM 591

  Fly   738 ETLLKYPTRDTSGQVATTPHKH 759
            |:.|..|..|         |:|
Zfish   592 ESHLALPPLD---------HEH 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064 58/220 (26%)
leucine-rich repeat 124..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380 7/19 (37%)
leucine-rich repeat 172..194 CDD:275380 8/28 (29%)
LRR_8 193..253 CDD:290566 23/64 (36%)
leucine-rich repeat 195..218 CDD:275380 8/22 (36%)
leucine-rich repeat 219..242 CDD:275380 9/22 (41%)
LRR_8 241..301 CDD:290566 14/59 (24%)
leucine-rich repeat 243..311 CDD:275380 13/67 (19%)
leucine-rich repeat 312..335 CDD:275380 4/27 (15%)
LRR_8 334..415 CDD:290566 26/82 (32%)
leucine-rich repeat 336..359 CDD:275380 7/23 (30%)
leucine-rich repeat 360..380 CDD:275380 6/20 (30%)
LRR_8 379..460 CDD:290566 21/83 (25%)
LRR_4 379..>415 CDD:289563 12/35 (34%)
leucine-rich repeat 381..404 CDD:275380 8/22 (36%)
leucine-rich repeat 405..449 CDD:275380 9/46 (20%)
lrrc4caNP_001018583.1 LRRNT 48..81 CDD:214470 9/38 (24%)
LRR <78..288 CDD:227223 66/259 (25%)
leucine-rich repeat 79..102 CDD:275380 8/22 (36%)
leucine-rich repeat 103..126 CDD:275380 9/22 (41%)
leucine-rich repeat 127..150 CDD:275380 9/46 (20%)
leucine-rich repeat 151..174 CDD:275380 8/48 (17%)
leucine-rich repeat 175..199 CDD:275380 7/23 (30%)
leucine-rich repeat 200..221 CDD:275380 6/20 (30%)
leucine-rich repeat 222..245 CDD:275380 8/22 (36%)
leucine-rich repeat 246..269 CDD:275380 4/22 (18%)
leucine-rich repeat 270..291 CDD:275380 4/20 (20%)
LRRCT 302..>340 CDD:214507 12/39 (31%)
IG 361..443 CDD:214652 14/81 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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