DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 2mit and 18w

DIOPT Version :9

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster


Alignment Length:1219 Identity:241/1219 - (19%)
Similarity:404/1219 - (33%) Gaps:352/1219 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 LNLTHRDLRTF--NSTGGQWKGDFQVITAMDLSSNQLESLSLDNF---NQLRQLDLGNNSLEVIP 158
            |:|.|.::.|.  |:..|     ...:..:::|.|.|.||..:.|   .:||:|.|..|.|..:|
  Fly   240 LSLQHNNISTLAPNALAG-----LSSLRVLNISYNHLVSLPSEAFAGNKELRELHLQGNDLYELP 299

  Fly   159 LSLADTNMSLPFVTLDLSCNKFS--QISTSFFAQRLPQLKNLNLAHNELLNISRESFYNLLELQT 221
            ..|......|  :.||||.|:.:  .:..|.|| .|.:|..|||::|.|..|..::|..|..||.
  Fly   300 KGLLHRLEQL--LVLDLSGNQLTSHHVDNSTFA-GLIRLIVLNLSNNALTRIGSKTFKELYFLQI 361

  Fly   222 LVLSHNNISDIDYETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFV 286
            |.:.:|:|..|:...||.|.||..|:|:.|||.....|...|:..|..|::..|....|..|.|.
  Fly   362 LDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFR 426

  Fly   287 ASWSLKELDASGTGLCQVPAAL--------------------------AQSVRTLKLSDNWLKAI 325
            ....|||||.|...|.:||.|:                          ...:..|:|.||.:..|
  Fly   427 NCSDLKELDLSSNQLTEVPEAVQDLSMLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNI 491

  Fly   326 NCGDMDSYPLLQYLDLSHSRIAQVEDDALGRLELLESLFLDRNLLMRVP---------------- 374
            ..|.....|.|..|:|:.:||..:|..|..:...:|::.||:|.|..:.                
  Fly   492 TVGMFQDLPRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSE 556

  Fly   375 --------SSLPPSLEHLFLQHNQIMELPPQAFVGLVNLQ------TLDLSNNRLIFLPPLSLP- 424
                    :.:|.:|:.|.:..|.|     :|......||      |||.|:||:..:..:|:| 
  Fly   557 NHLVWFDYAFIPSNLKWLDIHGNYI-----EALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPN 616

  Fly   425 ------------------------KLLTLNLESSGVESVSQSIVHTLP-----QLRDLLLEDNPI 460
                                    :|..::|.::.:..:|.:.:...|     .:.:..|..||.
  Fly   617 SIELLFINNNIIGQIQANTFVDKTRLARVDLYANVLSKISLNALRVAPVSAEKPVPEFYLGGNPF 681

  Fly   461 KCSDLLGIAEWASPCRS---------VDAG-------QSNGASVSGRVDLKTEYLQFHNFYEN-- 507
            :|...:   ||.....:         ||.|       .|..|.:.....|...  .|...||:  
  Fly   682 ECDCSM---EWLQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSAS--DFVCKYESHC 741

  Fly   508 --------FSSRECGIRKPEN---------DTKPPSCSLTRASATLTTTPRSMSKVEKSQEAQAT 555
                    :...||.:..|.|         .|....|.....:|.....|:.:|.:.....   .
  Fly   742 PPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDLYLDGN---N 803

  Fly   556 ATSVEVAAATAA---------TSEKTGIQATSAAQ-STAAATTAEREAIATATSSDTTATPTLAA 610
            ...:||...|..         .|....:|..|.|| ........|...:   |:.:.|...:|..
  Fly   804 MPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLHLENNKL---TALEGTEFRSLGL 865

  Fly   611 AAAIQSAGNIPAQLTTKTLRP-----------TETTSLAQLQRRQQMPGMPAKTTETPAKN---- 660
            ...:....|:...::..|..|           ...:||..||.|..:.|:      |..:|    
  Fly   866 LRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLPHLQYRHSLQGL------TLGRNAWSC 924

  Fly   661 ----LPSLAQTKATTALPILATRDA-------ATATTEI-------NSDKPTNISGATKTVATSA 707
                |..|||..:..|:.:   |||       |....|:       |....:::..|:.:..:|:
  Fly   925 RCQQLRELAQFVSDNAMVV---RDAHDIYCLDAGIKRELELIGNLANGPDCSDLLDASASNISSS 986

  Fly   708 AEIATPPAIEVPQTIL-------------AGKKSDKM----------------PADKAHETLLKY 743
            .::|....:.:...:|             ..::|.:|                .|.|.::.::.:
  Fly   987 QDLAGGYRLPLLAAVLVLIFLVVVLIIVFVFRESVRMWLFAHYGVRVCEPRFEDAGKLYDAIILH 1051

  Fly   744 PTRD----TSGQVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVD----AEQLLLPGTATVA 800
            ..:|    .....|...|.....:|.::.|.|  .|...|   :.||:    :.:::|..|..:.
  Fly  1052 SEKDYEFVCRNIAAELEHGRPPFRLCIQQRDL--PPQASH---LQLVEGARASRKIILVLTRNLL 1111

  Fly   801 DADSEVLDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKGH---------KKKPS------- 849
            ..:...::       .....|:|.....|...|..:|...|:..         |..||       
  Fly  1112 ATEWNRIE-------FRNAFHESLRGLAQKLVIIEETSVSAEAEDVAELSPYLKSVPSNRLLTCD 1169

  Fly   850 --------------LSIKKMTYSTKH---------------------AAKTVEDM-----AATSK 874
                          ||.:...|:..|                     |....|:|     :||:.
  Fly  1170 RYFWEKLRYAIPIELSPRGNNYTLDHHERFKQPVSPGMIFRQAPPPPAYYCTEEMEANYSSATTA 1234

  Fly   875 TPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVAC 939
            ||        :|:...|   ...|::...:.:......||:. ...|:.::....|..:.::.  
  Fly  1235 TP--------SPRPTRP---GGAARIVDSMPMPMRPPSEHIY-HSIESEYSAYDQHEALSMIP-- 1285

  Fly   940 VLFIVLLAGLAHVYRCELPWQRSNRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQK 1004
                   .||.|          .::..|||.|.|:   :.......|..|.........||....
  Fly  1286 -------TGLMH----------QHQQQQLRLHQQQ---QQQQQQRLLQPQFRAMPQQAIPAPSAP 1330

  Fly  1005 WH---------HSTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADKS 1044
            .|         .||..::...:......|::.|||:.||...|..|:|:
  Fly  1331 VHLRSGSGLSQASTSTQSTAQASTSAAAAQQQQQQQQQQAAGSEAANKN 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064 81/261 (31%)
leucine-rich repeat 124..143 CDD:275380 6/21 (29%)
leucine-rich repeat 144..167 CDD:275380 8/22 (36%)
leucine-rich repeat 172..194 CDD:275380 9/23 (39%)
LRR_8 193..253 CDD:290566 23/59 (39%)
leucine-rich repeat 195..218 CDD:275380 9/22 (41%)
leucine-rich repeat 219..242 CDD:275380 9/22 (41%)
LRR_8 241..301 CDD:290566 21/59 (36%)
leucine-rich repeat 243..311 CDD:275380 24/93 (26%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
LRR_8 334..415 CDD:290566 26/110 (24%)
leucine-rich repeat 336..359 CDD:275380 7/22 (32%)
leucine-rich repeat 360..380 CDD:275380 6/43 (14%)
LRR_8 379..460 CDD:290566 21/116 (18%)
LRR_4 379..>415 CDD:289563 12/41 (29%)
leucine-rich repeat 381..404 CDD:275380 5/22 (23%)
leucine-rich repeat 405..449 CDD:275380 14/79 (18%)
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:290566
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR_RI 210..464 CDD:238064 73/231 (32%)
leucine-rich repeat 212..236 CDD:275380
LRR_8 235..295 CDD:290566 17/59 (29%)
leucine-rich repeat 237..260 CDD:275380 6/24 (25%)
leucine-rich repeat 261..284 CDD:275380 6/22 (27%)
LRR_8 283..345 CDD:290566 23/64 (36%)
leucine-rich repeat 285..308 CDD:275380 8/22 (36%)
leucine-rich repeat 309..334 CDD:275380 10/27 (37%)
LRR_8 334..393 CDD:290566 23/58 (40%)
leucine-rich repeat 335..358 CDD:275380 9/22 (41%)
leucine-rich repeat 359..382 CDD:275380 9/22 (41%)
LRR_8 382..441 CDD:290566 21/58 (36%)
leucine-rich repeat 383..406 CDD:275380 8/22 (36%)
leucine-rich repeat 407..430 CDD:275380 6/22 (27%)
LRR_8 431..488 CDD:290566 14/56 (25%)
leucine-rich repeat 431..451 CDD:275380 10/19 (53%)
leucine-rich repeat 454..477 CDD:275380 0/22 (0%)
LRR_8 477..559 CDD:290566 19/81 (23%)
leucine-rich repeat 478..499 CDD:275380 6/20 (30%)
leucine-rich repeat 502..525 CDD:275380 7/22 (32%)
leucine-rich repeat 526..548 CDD:275380 5/21 (24%)
leucine-rich repeat 590..617 CDD:275380 10/26 (38%)
leucine-rich repeat 618..641 CDD:275380 0/22 (0%)
leucine-rich repeat 642..689 CDD:275380 8/49 (16%)
LRRCT 679..736 CDD:214507 12/61 (20%)
leucine-rich repeat 775..796 CDD:275380 3/20 (15%)
LRR_8 797..852 CDD:290566 9/57 (16%)
leucine-rich repeat 797..817 CDD:275380 3/22 (14%)
leucine-rich repeat 818..841 CDD:275380 5/22 (23%)
LRR_8 841..900 CDD:290566 7/61 (11%)
leucine-rich repeat 842..865 CDD:275380 4/25 (16%)
LRR_4 866..907 CDD:289563 5/40 (13%)
leucine-rich repeat 866..889 CDD:275380 3/22 (14%)
leucine-rich repeat 890..911 CDD:275380 5/20 (25%)
TIR 1045..1183 CDD:214587 21/149 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453554
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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