DRSC/TRiP Functional Genomics Resources

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Protein Alignment 2mit and Lrrc4b

DIOPT Version :9

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_001258010.1 Gene:Lrrc4b / 308571 RGDID:1307121 Length:709 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064
leucine-rich repeat 124..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 172..194 CDD:275380
LRR_8 193..253 CDD:290566
leucine-rich repeat 195..218 CDD:275380
leucine-rich repeat 219..242 CDD:275380
LRR_8 241..301 CDD:290566
leucine-rich repeat 243..311 CDD:275380
leucine-rich repeat 312..335 CDD:275380
LRR_8 334..415 CDD:290566
leucine-rich repeat 336..359 CDD:275380
leucine-rich repeat 360..380 CDD:275380
LRR_8 379..460 CDD:290566
LRR_4 379..>415 CDD:289563
leucine-rich repeat 381..404 CDD:275380
leucine-rich repeat 405..449 CDD:275380
Lrrc4bNP_001258010.1 LRRNT 59..92 CDD:214470
LRR <89..299 CDD:227223
LRR 1 89..110
leucine-rich repeat 90..113 CDD:275380
LRR 2 113..134
leucine-rich repeat 114..137 CDD:275380
LRR 3 137..158
leucine-rich repeat 138..161 CDD:275380
LRR 4 161..182
leucine-rich repeat 162..185 CDD:275380
LRR 5 185..207
leucine-rich repeat 186..210 CDD:275380
LRR 6 210..231
leucine-rich repeat 211..232 CDD:275380
LRR 7 232..253
leucine-rich repeat 233..256 CDD:275380
LRR 8 256..277
leucine-rich repeat 257..280 CDD:275380
LRR 9 280..301
leucine-rich repeat 281..302 CDD:275380
LRRCT 313..363 CDD:214507
I-set 366..455 CDD:400151
Ig strand A 366..369 CDD:409353
Ig strand A' 373..376 CDD:409353
Ig strand B 382..389 CDD:409353
Ig strand C 395..400 CDD:409353
Ig strand C' 403..405 CDD:409353
Ig strand D 414..418 CDD:409353
Ig strand E 421..425 CDD:409353
Ig strand F 435..442 CDD:409353
Ig strand G 445..455 CDD:409353
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..552
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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