DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 2mit and KERA

DIOPT Version :9

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_008966.1 Gene:KERA / 11081 HGNCID:6309 Length:352 Species:Homo sapiens


Alignment Length:229 Identity:62/229 - (27%)
Similarity:104/229 - (45%) Gaps:45/229 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 GLCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQ--VEDDALGRLELLES 362
            ||.::| |:...:..|.|.:|.::.|.....::...|::::|:.::|..  :|..||.:|:.|..
Human    62 GLKEIP-AIPSRIWYLYLQNNLIETIPEKPFENATQLRWINLNKNKITNYGIEKGALSQLKKLLF 125

  Fly   363 LFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFVGLVNLQTLDLSNNRLI----------- 416
            |||:.|.|..|||.||.|||.|.|..|::..:|...|..|.||..|||.||:|:           
Human   126 LFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQGTFSNLENLTLLDLQNNKLVDNAFQRDTFKG 190

  Fly   417 ---------------FLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQLRDLLLEDNPIKCSDLL 466
                           .:||......:.|.|:::.:|.:.::..:.:|::..|.|..|  |.||  
Human   191 LKNLMQLNMAKNALRNMPPRLPANTMQLFLDNNSIEGIPENYFNVIPKVAFLRLNHN--KLSD-- 251

  Fly   467 GIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ 500
                        :...|.|..||..:||:..:.|
Human   252 ------------EGLPSRGFDVSSILDLQLSHNQ 273

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064 13/56 (23%)
leucine-rich repeat 124..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 172..194 CDD:275380
LRR_8 193..253 CDD:290566
leucine-rich repeat 195..218 CDD:275380
leucine-rich repeat 219..242 CDD:275380