DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 2mit and wu:fc23c09

DIOPT Version :10

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_001410060.1 Gene:wu:fc23c09 / 101882092 ZFINID:ZDB-GENE-030131-2988 Length:678 Species:Danio rerio


Alignment Length:416 Identity:107/416 - (25%)
Similarity:177/416 - (42%) Gaps:90/416 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 HLVDIPTSSRLAAEREEQQLSRQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNA 94
            |||.||..                   :.|.|.:.:|.: |:.||.                   
Zfish   324 HLVKIPYG-------------------IPYNSRYILLMN-NKIDSI------------------- 349

  Fly    95 PANKLNLTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLGNNSLEVIPL 159
               :|||    |..::|.      :|.|:....|:.:.::. :.:...:|::|.:..|.|..|| 
Zfish   350 ---QLNL----LSQYDSM------EFLVLRNNRLTDSAVKK-AFEGIQRLKRLYVERNLLRSIP- 399

  Fly   160 SLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNLAHNELLNISRESFYNLLELQTLVL 224
                |::......|.|..|:.|.:|.:.| :|.|.|:.|:|::|.||.|.......|..|:||.|
Zfish   400 ----TDLPATLEELRLDWNQISAMSNAAF-ERCPSLQILSLSNNTLLTIPPGVLLPLGSLRTLTL 459

  Fly   225 SHNNISDIDYETFLALPNLQYLDLSHNRLSGSAIRALQGIP-------DLVSLSIAYNPDVGVAM 282
            |:|.::.:..:..|:|..|.        |.|:.|:.|||..       .::.||:....|.|:..
Zfish   460 SYNQLASVPMQLPLSLRELY--------LRGNRIQRLQGDMFWGESELQILDLSLNRLTDKGLGK 516

  Fly   283 QEFVASWSLKELDASGTGLCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIA 347
            ...:.:..|:.|:..|..|.:||..|..:::||.|..|::.:|......|.|.|::|.|:.::||
Zfish   517 AALLNATGLESLNLEGNLLKRVPRHLPHTIKTLNLEGNFILSITKDAFVSMPQLEHLGLARNKIA 581

  Fly   348 QVEDDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV-GLVNLQTLDLS 411
            :|...|...|.||..|.:..|.|.:||..||..|......||.|..:|..||. |..|:.     
Zfish   582 KVALGAFRVLPLLHQLDMSYNALEQVPRQLPLWLHSATFMHNNIRSIPRDAFCWGRDNVS----- 641

  Fly   412 NNRLIFLPPLSLPKLLTLNLESSGVE 437
                    |||  :|:.:.||.:.::
Zfish   642 --------PLS--RLVKVQLEYNMID 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR <106..458 CDD:443914 93/340 (27%)
leucine-rich repeat 124..143 CDD:275380 1/18 (6%)
leucine-rich repeat 144..167 CDD:275380 7/22 (32%)
leucine-rich repeat 172..194 CDD:275380 7/21 (33%)
leucine-rich repeat 195..218 CDD:275380 8/22 (36%)
leucine-rich repeat 219..242 CDD:275380 8/22 (36%)
leucine-rich repeat 243..311 CDD:275380 18/74 (24%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
leucine-rich repeat 336..359 CDD:275380 8/22 (36%)
leucine-rich repeat 360..380 CDD:275380 8/19 (42%)
leucine-rich repeat 381..404 CDD:275380 8/23 (35%)
leucine-rich repeat 405..449 CDD:275380 6/33 (18%)
wu:fc23c09NP_001410060.1 LRRNT 307..335 CDD:214470 5/29 (17%)
leucine-rich repeat 316..334 CDD:275380 5/28 (18%)
leucine-rich repeat 337..359 CDD:275380 8/48 (17%)
LRR 339..>560 CDD:443914 65/268 (24%)
leucine-rich repeat 360..384 CDD:275380 3/30 (10%)
leucine-rich repeat 385..404 CDD:275380 7/23 (30%)
leucine-rich repeat 406..429 CDD:275380 7/23 (30%)
leucine-rich repeat 430..453 CDD:275380 8/22 (36%)
leucine-rich repeat 454..474 CDD:275380 6/19 (32%)
leucine-rich repeat 475..498 CDD:275380 8/30 (27%)
leucine-rich repeat 499..524 CDD:275380 4/24 (17%)
leucine-rich repeat 525..544 CDD:275380 7/18 (39%)
leucine-rich repeat 546..569 CDD:275380 6/22 (27%)
LRR_8 547..604 CDD:404697 19/56 (34%)
leucine-rich repeat 570..593 CDD:275380 8/22 (36%)
leucine-rich repeat 618..645 CDD:275380 11/41 (27%)
leucine-rich repeat 646..671 CDD:275380 3/12 (25%)

Return to query results.
Submit another query.