DRSC/TRiP Functional Genomics Resources

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Protein Alignment 2mit and lrrc4

DIOPT Version :10

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_002939414.1 Gene:lrrc4 / 100493671 XenbaseID:XB-GENE-968937 Length:641 Species:Xenopus tropicalis


Alignment Length:589 Identity:135/589 - (22%)
Similarity:223/589 - (37%) Gaps:120/589 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 SC-NKFSQI-----STSFFAQRLP-QLKNLNLAHNELLNISRESFYNLLELQTLVLSHNNISDID 233
            || |:||::     ..|...|.:| ..::|||..|.:..|..::|.:|..|:.|.|..|:|..|:
 Frog    45 SCSNQFSKVVCTRRGLSEVPQGIPSNTRSLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 109

  Fly   234 YETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASG 298
            ...|..|.:|..|:|..|.|:.....|.:.:..|..|.:..||      .|.:.|::..      
 Frog   110 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP------IESIPSYAFN------ 162

  Fly   299 TGLCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVEDDALGRLELLESL 363
                :||:.:...:..||.    |:.|:.|..:....|:||:|.   :..:.|            
 Frog   163 ----RVPSLMRLDLGELKK----LEYISEGAFEGLYNLKYLNLG---MCNIRD------------ 204

  Fly   364 FLDRNLLMRVPSSLP-PSLEHLFLQHNQIMELPPQAFVGLVNLQTLDLSNNRLIFLPPLS---LP 424
                     :|:..| ..||.|.:..|...|:.|.:|.||.:|:.|.:.|:::..:...:   |.
 Frog   205 ---------MPNLTPLVGLEELEISGNNFPEIKPGSFHGLRSLKKLWIMNSQINTIERNAFDDLT 260

  Fly   425 KLLTLNLESSGVESVSQSIVHTLPQLRDLLLEDNPIKCS-DLLGIAEWAS---PCRSVDAGQSNG 485
            .|:.|||..:.|.|:...:...|..|.:|.|..||..|. |:|.::.|..   |..|...|:.:.
 Frog   261 SLVELNLAHNNVTSLPHDLFAPLKYLVELHLHHNPWDCDCDVLWLSWWLREYIPTNSTCCGRCHS 325

  Fly   486 -ASVSGRVDLKTEYLQFH---NFYENFSSRECGI---RKPENDTKPPSCSLTR---ASATLTTTP 540
             ..:.|:..::.::..|.   .|..: :.|:..|   |..|...:..:.|..|   .:.|:.|..
 Frog   326 PPHMRGKYVVEVDHSMFQCSAPFIMD-APRDLNISEGRMAELKCRTSAMSSVRWLLPNGTVLTHA 389

  Fly   541 RSMSKVEKSQEAQATATSVEVAAATAATSEKTGIQATSAAQ-----STAAATTAEREAIATATSS 600
            .:..::....:.....:.|.:......|...|.:...|.|.     |||...|:......|.|..
 Frog   390 SNHPRITILNDGTLNFSQVLLTDTGVYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVE 454

  Fly   601 DTTATP----TLAAAAAIQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQMPGMPAKTTETPAKNL 661
            .|...|    .:.......|.|..||..||       ||.|.|..:..:...:|  |::...|..
 Frog   455 TTEVAPEDISMIFKPVPTTSTGYQPAYTTT-------TTVLIQTTKMPKQVAVP--TSDAGDKMQ 510

  Fly   662 PSLAQTKATT--------ALPILA-----------------TRDAATATTE-------INSDKPT 694
            .||.:...||        |:.:||                 :..||..|.|       |.|..||
 Frog   511 TSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVAAARTVEIIQVDEDIPSGSPT 575

  Fly   695 NISG 698
            .:||
 Frog   576 GVSG 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR <106..458 CDD:443914 72/292 (25%)
leucine-rich repeat 124..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 172..194 CDD:275380 8/24 (33%)
leucine-rich repeat 195..218 CDD:275380 7/22 (32%)
leucine-rich repeat 219..242 CDD:275380 8/22 (36%)
leucine-rich repeat 243..311 CDD:275380 14/67 (21%)
leucine-rich repeat 312..335 CDD:275380 5/22 (23%)
leucine-rich repeat 336..359 CDD:275380 5/22 (23%)
leucine-rich repeat 360..380 CDD:275380 2/20 (10%)
leucine-rich repeat 381..404 CDD:275380 9/22 (41%)
leucine-rich repeat 405..449 CDD:275380 11/46 (24%)
lrrc4XP_002939414.1 LRRNT 40..71 CDD:214470 8/25 (32%)
LRR <69..>295 CDD:443914 64/269 (24%)
leucine-rich repeat 71..94 CDD:275380 7/22 (32%)
leucine-rich repeat 95..118 CDD:275380 8/22 (36%)
leucine-rich repeat 119..142 CDD:275380 6/22 (27%)
leucine-rich repeat 143..166 CDD:275380 7/38 (18%)
leucine-rich repeat 167..191 CDD:275380 5/27 (19%)
leucine-rich repeat 192..213 CDD:275380 7/44 (16%)
leucine-rich repeat 214..237 CDD:275380 9/22 (41%)
leucine-rich repeat 238..261 CDD:275380 4/22 (18%)
leucine-rich repeat 262..283 CDD:275380 6/20 (30%)
LRRCT 294..345 CDD:214507 11/50 (22%)
IG_like 353..435 CDD:214653 13/81 (16%)
Ig strand B 364..368 CDD:409353 1/3 (33%)
Ig strand C 376..379 CDD:409353 1/2 (50%)
Ig strand E 402..405 CDD:409353 0/2 (0%)
Ig strand F 415..420 CDD:409353 1/4 (25%)
Ig strand G 428..431 CDD:409353 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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