DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sim and HIF3A

DIOPT Version :9

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:XP_016882621.1 Gene:HIF3A / 64344 HGNCID:15825 Length:755 Species:Homo sapiens


Alignment Length:486 Identity:156/486 - (32%)
Similarity:236/486 - (48%) Gaps:72/486 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGS 90
            ||||::|||:||.:|.....:||..||....:::.|||||::|||.|||:|.::...|   .|. 
Human    60 KEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLRMHRLCAAG---EWN- 120

  Fly    91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEYIHNYD 155
                |.||..:.|.:..|:.|:||:.|:..:|.:.|:||..|.||||||:||.|:|||::||..|
Human   121 ----QVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCD 181

  Fly   156 QDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSHTIEIEKTFFLRMKCVLAK-- 218
            |:|:...|:....:::..             |:.|:             |:.|.||||..|..  
Human   182 QEELQDALTPQQTLSRRK-------------VEAPT-------------ERCFSLRMKSTLTSRG 220

  Fly   219 RNAGLTTSGFKVIHCSGYLKARIYPDRGDGQGS-----LIQNLGLVAVGHSLPSSAITEIKLHQN 278
            |...|..:.:||::|||:::|...|.:....||     .:|.|.|:.  .::|.....|..|.:.
Human   221 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLIC--EAIPHPGSLEPPLGRG 283

  Fly   279 MFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYY 343
            .|:.|..||||..:.|.|::::.||.|.|||..:.|:||||.|..|:..|...||.|||..|..|
Human   284 AFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQY 348

  Fly   344 RFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKREPI----- 403
            |||.:.||::|.|:.||:|...|..:...||.|::::|:.|...:||:..||....|.||     
Human   349 RFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRRPIQRGAP 413

  Fly   404 -------------SPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSVVVQPQCAGA 455
                         :|..:..........::||.||.......         |....::.|...||
Human   414 SQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCS---------PDLRRLLGPILDGA 469

  Fly   456 TGQPVGPGTPVSLALSASPKLDPYFEPELPL 486
            : ....|.||::.....|| |......|||:
Human   470 S-VAATPSTPLATRHPQSP-LSADLPDELPV 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 HLH 26..78 CDD:238036 26/51 (51%)
PAS 102..215 CDD:279347 37/112 (33%)
PAS 102..163 CDD:214512 28/60 (47%)
PAS 278..376 CDD:238075 42/97 (43%)
PAS_3 291..377 CDD:285623 36/85 (42%)
HIF3AXP_016882621.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3558
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000232
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.