DRSC/TRiP Functional Genomics Resources

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Protein Alignment sim and ahrra

DIOPT Version :10

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001030342.2 Gene:ahrra / 641291 ZFINID:ZDB-GENE-051018-1 Length:550 Species:Danio rerio


Alignment Length:228 Identity:67/228 - (29%)
Similarity:108/228 - (47%) Gaps:21/228 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 KTCAMKEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQ----VFP 81
            |..|:..:..|.::..||:.|.|...||:|||.......:|||.||:||:.|||:::.    :..
Zfish    22 KPAALMSEKSNPSKRHRERLNAELERLAELLPFGPDTVCKLDKLSVLRLSVSYLRIKSFCSVLAQ 86

  Fly    82 DGLGEAWGSSPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNS 146
            :...|...|.......|........||::|.||..||:.||.:.|.|.|.:.:||..|.::...:
Zfish    87 ENPCETQTSKNQQDTPAACVPESQLLLESLAGFALVVSGDGMVFYASSTIADYLGFHQTDVMHQN 151

  Fly   147 IFEYIHNYDQDEMNAILSLHPHIN-QHPLAQTHTPIGSPNGVQHPSAYDHDRGSH-----TIEIE 205
            :|:|||..|:.|...  .||..:| .:|.||:.   |:.......|.:..|:.:.     :..:.
Zfish   152 VFDYIHVDDRQEFRR--QLHWAMNPPNPEAQSS---GTAEEFAVSSLFQSDQPAGVPPELSCFLS 211

  Fly   206 KTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLK 238
            :.|.||::|:|.      :||||..:...|.||
Zfish   212 RCFILRVRCLLD------STSGFLTMQFQGQLK 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 bHLH-PAS_dSIM_like 25..86 CDD:381583 20/64 (31%)
PAS 102..215 CDD:395786 33/118 (28%)
PAS_3 291..377 CDD:430001
ahrraNP_001030342.2 None
Blue background indicates that the domain is not in the aligned region.

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