DRSC/TRiP Functional Genomics Resources

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Protein Alignment sim and sim1b

DIOPT Version :9

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001153057.1 Gene:sim1b / 566656 ZFINID:ZDB-GENE-041210-5 Length:586 Species:Danio rerio


Alignment Length:666 Identity:299/666 - (44%)
Similarity:369/666 - (55%) Gaps:115/666 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 MKEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWG 89
            ||||||.||||||||||:||.||||:||||:||||||||||:||||:||||||.|||.||||.||
Zfish     1 MKEKSKTAARTRREKENSEFYELAKMLPLPSAITSQLDKASIIRLTSSYLKMRLVFPQGLGEVWG 65

  Fly    90 SSPAMQRGAT-IKELGSHL--------LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGN 145
            .:...:.|.. ..||||||        ||||||||||||.|||||||||||||||||||||||||
Zfish    66 QAGRTRSGENPSHELGSHLLQVIISKMLQTLDGFIFVVAADGKIMYISETASVHLGLSQVELTGN 130

  Fly   146 SIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSHTIEIEKTFFL 210
            ||:||:|..|.|||.|:|:..|..:.|.:.:                         .|:|::|||
Zfish   131 SIYEYVHPADHDEMAAVLTPQPSYHSHFVQE-------------------------YEVERSFFL 170

  Fly   211 RMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDRGDGQGSLIQNLGLVAVGHSLPSSAITEIKL 275
            ||||||||||||||:.|:||||||||||.|.:...........||:|||||||:||.||:|||||
Zfish   171 RMKCVLAKRNAGLTSGGYKVIHCSGYLKIRQFSLDASPFDGCYQNVGLVAVGHTLPPSAVTEIKL 235

  Fly   276 HQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTT 340
            |.|||||||.|||||||.|:|||.|||||||||||||||.::|..|...:||:|.:||.||||||
Zfish   236 HSNMFMFRASLDMKLIFLDSRVSDLTGYEPQDLIEKTLYHHVHCCDSFHLRCAHHLLLVKGQVTT 300

  Fly   341 KYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKREPISP 405
            ||||||:|.|||||||||||:||||||||...||||||||::.|.|.|:|:..|.     .|..|
Zfish   301 KYYRFLSKRGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLILSLDQL-----NPRKP 360

  Fly   406 AAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQS-------VVVQPQCAGATGQPVGPG 463
            |...|..:.......:......:|.:|...:   ..|.:|       ....|....|:.|.:...
Zfish   361 AFPYANHSDKTHTTNSRSKILLSHYSQQFSS---FPPDRSDSDHDSQWEDSPLTDSASPQRLDRS 422

  Fly   464 TPVSLALSASPKLDPYFEPELPLQPAVTPVPPTNNSSSSSNNNNGVW-------HHHHVQQQQQS 521
            ..|..:|:.|..:....:...||                 .|.:|.|       |.|.|      
Zfish   423 DSVCFSLAQSDVMQSCSQTHTPL-----------------FNRDGWWDARAANQHSHAV------ 464

  Fly   522 GSMDHDSLSYTQLYPPLNDLVVSSSSSVGGGTASSAGGGSSASASSSGVYSTEMQYPDTTTGNLY 586
              .|.|               :||||      |.||.|..|...::..:...|..:....:.:..
Zfish   465 --WDED---------------LSSSS------AQSADGAQSLIRAAPELIKVEEAHMRDYSSSSL 506

  Fly   587 YNNNNHYYYDYDATVDVATSMIRPFSANSNSCSSSSESERQLSTGNASI-VNETSPSQTTYS--- 647
            :::..|...|.|.:         |.|.::.|...|....:.||....:: ...|.||...||   
Zfish   507 FSSARHRDGDPDGS---------PASLSALSSPGSDRPSQPLSASPPALETTHTHPSLRAYSAHY 562

  Fly   648 DLSHNFELSYFSDNSS 663
            |::.:|:.|..:.|.:
Zfish   563 DINTHFQSSTTAHNGT 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 HLH 26..78 CDD:238036 44/51 (86%)
PAS 102..215 CDD:279347 64/120 (53%)
PAS 102..163 CDD:214512 53/68 (78%)
PAS 278..376 CDD:238075 74/97 (76%)
PAS_3 291..377 CDD:285623 63/85 (74%)
sim1bNP_001153057.1 HLH 2..52 CDD:238036 42/49 (86%)
PAS 92..>149 CDD:279347 47/56 (84%)
PAS 92..148 CDD:214512 47/55 (85%)
PAS 237..336 CDD:238075 74/98 (76%)
PAS_3 251..337 CDD:285623 63/85 (74%)
SIM_C 357..>498 CDD:284122 34/189 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4708
eggNOG 1 0.900 - - E1_KOG3558
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 469 1.000 Inparanoid score I1488
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000232
OrthoInspector 1 1.000 - - otm24682
orthoMCL 1 0.900 - - OOG6_106200
Panther 1 1.100 - - O PTHR23043
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2563
SonicParanoid 1 1.000 - - X501
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.850

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