DRSC/TRiP Functional Genomics Resources

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Protein Alignment sim and ahrrb

DIOPT Version :10

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001029092.1 Gene:ahrrb / 565319 ZFINID:ZDB-GENE-051018-2 Length:573 Species:Danio rerio


Alignment Length:263 Identity:76/263 - (28%)
Similarity:119/263 - (45%) Gaps:32/263 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 EKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGSS 91
            ::..|.::..|::.|.|...|..|||..|.:.::|||.||:||:.|:|:::..| ..:.|....|
Zfish    27 DQKSNPSKRHRDRLNAELDRLGSLLPFSAEVITKLDKLSVLRLSVSFLRVKSFF-QAVQEKENHS 90

  Fly    92 PAMQRGATIKEL------GSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEY 150
            ..:....|.||:      ...|||:|.||..||:.||.|.|.|.|...:||..|.::....:|:|
Zfish    91 ADVSPTETRKEVQPCVVESDLLLQSLSGFALVVSSDGIIFYASSTIIDYLGFHQTDVMHQKVFDY 155

  Fly   151 IHNYDQDEMNAILSLHPHIN------QHPLAQTHT-PIGSPNGVQHPSAYDHDRGSHTIEIEKTF 208
            ||..::.|...  .:|..:|      ...:...|. ....|:||. |..        |..:.:.|
Zfish   156 IHVDERQEFRK--QIHWAMNPGQQDTDEDVVTAHLYSAEQPDGVS-PEL--------TPFLTRCF 209

  Fly   209 FLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDRGDGQGSLI-QNLGLVAVGHSLPSSAITE 272
            ..||:|:|.      :||||..:...|.||......|....|:|: ..|.|..|...|...:|||
Zfish   210 IARMRCLLD------STSGFLNMQFQGSLKFLQGQRRRTLSGALLPPQLALFCVAVPLVLPSITE 268

  Fly   273 IKL 275
            :::
Zfish   269 LRM 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 bHLH-PAS_dSIM_like 25..86 CDD:381583 19/58 (33%)
PAS 102..215 CDD:395786 34/125 (27%)
PAS_3 291..377 CDD:430001
ahrrbNP_001029092.1 bHLH_SF 26..85 CDD:469605 19/58 (33%)
PAS 110..>183 CDD:395786 24/74 (32%)
Blue background indicates that the domain is not in the aligned region.

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