DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sim and Sim1

DIOPT Version :9

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001101111.1 Gene:Sim1 / 309888 RGDID:1309949 Length:765 Species:Rattus norvegicus


Alignment Length:733 Identity:318/733 - (43%)
Similarity:384/733 - (52%) Gaps:167/733 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 MKEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWG 89
            |||||||||||||||||:||.|||||||||:||||||||||:|||||||||||.|||:|||||||
  Rat     1 MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGLGEAWG 65

  Fly    90 ----SSPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEY 150
                :||....|   :||||||||||||||||||||||||||||||||||||||||||||||:||
  Rat    66 HTSRTSPLDNVG---RELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEY 127

  Fly   151 IHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSHTIEIEKTFFLRMKCV 215
            ||..|.|||.|:|:.|...:.|.:.:                         .|||::||||||||
  Rat   128 IHPADHDEMTAVLTAHQPYHSHFVQE-------------------------YEIERSFFLRMKCV 167

  Fly   216 LAKRNAGLTTSGFKVIHCSGYLKARIYP-DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNM 279
            |||||||||..|:||||||||||.|.|. |.....| ..||:||||||||||.||:||||||.||
  Rat   168 LAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDG-CYQNVGLVAVGHSLPPSAVTEIKLHSNM 231

  Fly   280 FMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYR 344
            |||||.|||||||.|:||::|||||||||||||||.::|..|...:||:|.:||.||||||||||
  Rat   232 FMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYR 296

  Fly   345 FLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKREPISPAAQ- 408
            ||.|.|||||||||||:||||||||...||||||||::.|.|.|.|:        .:.|||:.. 
  Rat   297 FLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLS--------LDQISPSKPT 353

  Fly   409 -AAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSVVVQPQCAGATGQPVGPGTPVSLALSA 472
             :..::.........:.|::...:...:::....||.|.....:.........| |:|  |..:|
  Rat   354 FSYTSSSTPTITDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSESDHDSQWG-GSP--LTDTA 415

  Fly   473 SPKLDPYFEPELP-----LQPAVTPVP-------------------------------------- 494
            ||:|   .:||.|     |..|....|                                      
  Rat   416 SPQL---LDPERPGSQHELSCAYRQFPDRGSLCYGFALDHSRLVEDRHFHTQACEGGRCEAGRYF 477

  Fly   495 ------------------PTNNSSSSSNN--NNGVWHHHHVQQQQQSGSMDHDSLSYTQLYPPLN 539
                              |...:|..|..  .|.:.|...|.:....|..|.||           
  Rat   478 LGAPPAGRDPWWGSRAALPLTKASPESRETYENSMPHITSVHRLHGRGHWDEDS----------- 531

  Fly   540 DLVVSSSSSVGGGTASSAGGGSSASASSSGVYSTEMQYPDTTTGNLYYNNNNHYYYDYDATVDVA 604
              ||||...   |:||.:|..          |.:|.           |.|:.|.....:..:...
  Rat   532 --VVSSPDP---GSASESGDR----------YRSEQ-----------YQNSPHEPSKIETLIRAT 570

  Fly   605 TSMIRPFSANSNSCSSSSESERQLSTGNAS-------IVNETSPSQTTYSDLSHNFELSYFSDNS 662
            ..||:   ...|..........||::.|.:       ..|...|...  .::.|:..|:     |
  Rat   571 QQMIK---EEENRLQLRKAPPDQLASINGAGKKHSLCFANYQQPPPA--GEVCHSSALT-----S 625

  Fly   663 SQQHQHQQQQQHLMEQQH 680
            :....|.||::..|...|
  Rat   626 TSPCDHIQQREGKMLSPH 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 HLH 26..78 CDD:238036 47/51 (92%)
PAS 102..215 CDD:279347 67/112 (60%)
PAS 102..163 CDD:214512 55/60 (92%)
PAS 278..376 CDD:238075 73/97 (75%)
PAS_3 291..377 CDD:285623 62/85 (73%)
Sim1NP_001101111.1 HLH 2..52 CDD:238036 45/49 (92%)
PAS 79..>141 CDD:279347 55/61 (90%)
PAS 88..>158 CDD:238075 51/94 (54%)
PAS 229..328 CDD:238075 73/98 (74%)
PAS_3 243..329 CDD:285623 62/85 (73%)
SIM_C 360..668 CDD:284122 57/337 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4663
eggNOG 1 0.900 - - E1_KOG3558
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 476 1.000 Inparanoid score I1427
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000232
OrthoInspector 1 1.000 - - otm46444
orthoMCL 1 0.900 - - OOG6_106200
Panther 1 1.100 - - LDO PTHR23043
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X501
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.820

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