DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sim and Sim2

DIOPT Version :9

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001100578.1 Gene:Sim2 / 304071 RGDID:1308016 Length:656 Species:Rattus norvegicus


Alignment Length:544 Identity:280/544 - (51%)
Similarity:333/544 - (61%) Gaps:94/544 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 MKEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWG 89
            |||||||||:|||||||.||.|||||||||:||||||||||:|||||||||||.|||:|||:|||
  Rat     1 MKEKSKNAAKTRREKENGEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRAVFPEGLGDAWG 65

  Fly    90 S-SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEYIHN 153
            . |......:..||||||||||||||:||||.|||||||||||||||||||||||||||:||||.
  Rat    66 QPSRTGPLDSVAKELGSHLLQTLDGFVFVVASDGKIMYISETASVHLGLSQVELTGNSIYEYIHP 130

  Fly   154 YDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSHTIEIEKTFFLRMKCVLAK 218
            .|.|||.|:|:.||.::.|.|.:                         .|||::|||||||||||
  Rat   131 SDHDEMTAVLTAHPPLHHHLLQE-------------------------YEIERSFFLRMKCVLAK 170

  Fly   219 RNAGLTTSGFKVIHCSGYLKARIYPDRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFR 283
            ||||||.||:||||||||||.|.|........|..|.:||||||.|||.|||||||||.||||||
  Rat   171 RNAGLTCSGYKVIHCSGYLKIRQYMLDMSLYDSCYQIVGLVAVGQSLPPSAITEIKLHNNMFMFR 235

  Fly   284 AKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTK 348
            |.||:||||.|:||::|||||||||||||||.::|..|...:|.:|.:||.||||||||||.|:|
  Rat   236 ASLDLKLIFLDSRVTELTGYEPQDLIEKTLYHHVHGCDTFHLRYAHHLLLVKGQVTTKYYRLLSK 300

  Fly   349 GGGWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVK-----REPISPAAQ 408
            .|||||||||||:||||||||...||||||||:|.|.|:|.|:..|....|     |..:|.:.:
  Rat   301 LGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEVEYKELQLSLDQVSTSKSQESWRTTLSTSQE 365

  Fly   409 AAQAAQ--------------------AAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSV------- 446
            ..::|:                    ::......:.:||.:...:.....|..|:|.:       
  Rat   366 TRKSAKPKTTKMRTKLRTNPYPSQQYSSFQMDKLECSQAGNWRTSPPTSAVAPPEQQLHSEASDL 430

  Fly   447 -------------------------VVQPQCAGATGQPVGPGTPVSLA------LSASPKLDPYF 480
                                     ..:|......|||  .|:|..:|      |.||.:...::
  Rat   431 LYGPPYSLPFSYRYGHFPLDSHVFSSKKPGLPAKFGQP--QGSPCEVARFFLSTLPASSECQWHY 493

  Fly   481 EPELPLQPAVTPVPPTNNSSSSSN 504
            ...  |.|: :|.|..|.|.|..|
  Rat   494 ANS--LMPS-SPSPAKNLSESPVN 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 HLH 26..78 CDD:238036 46/51 (90%)
PAS 102..215 CDD:279347 67/112 (60%)
PAS 102..163 CDD:214512 53/60 (88%)
PAS 278..376 CDD:238075 70/97 (72%)
PAS_3 291..377 CDD:285623 60/85 (71%)
Sim2NP_001100578.1 HLH 2..52 CDD:238036 44/49 (90%)
PAS 79..>141 CDD:279347 53/61 (87%)
PAS 79..140 CDD:214512 53/60 (88%)
PAS 230..328 CDD:238075 70/97 (72%)
PAS_3 243..329 CDD:285623 60/85 (71%)
SIM_C 359..649 CDD:284122 25/161 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4663
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 476 1.000 Inparanoid score I1427
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000232
OrthoInspector 1 1.000 - - otm46444
orthoMCL 1 0.900 - - OOG6_106200
Panther 1 1.100 - - O PTHR23043
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X501
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.960

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