DRSC/TRiP Functional Genomics Resources

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Protein Alignment sim and Arnt2

DIOPT Version :9

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_036913.3 Gene:Arnt2 / 25243 RGDID:2154 Length:712 Species:Rattus norvegicus


Alignment Length:713 Identity:159/713 - (22%)
Similarity:268/713 - (37%) Gaps:167/713 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLK-MRQVFPDGLGEAWG 89
            :|......|.||.|......||:.::|..:|:..:.||.:::|:..|::| ||     |.|....
  Rat    65 RENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMR-----GTGNKST 124

  Fly    90 SSPAMQRGATIKELGSHLLQTLDGFIFVVAPD-GKIMYISETASVHLGLSQVELTGNSIFEYIHN 153
            .........|.:||...:|:..|||:||||.: |:::|:|::.:..|...|.|..|::::|.:|.
  Rat   125 DGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGSTLYEQVHP 189

  Fly   154 YDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSHTIEIEKTFFLRMKC---- 214
            .|.:::...|....:.....:....|......|.|  |:.....||     .::|..||:|    
  Rat   190 DDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQ--SSMRMCMGS-----RRSFICRMRCGNAP 247

  Fly   215 ----------VLAKR---NAGLTTSG---FKVIHCSGYLKARIYP---------DRGDGQGSLIQ 254
                      .:.||   ..|....|   :.|:||:||:||  :|         |...||||   
  Rat   248 LDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGYIKA--WPPAGMSIPEEDADVGQGS--- 307

  Fly   255 NLGLVAVGH-SLPSSAI----------TEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDL 308
            ...|||:|. .:.||.:          ||       |:.|...|..:.|.|.|...:.||:||||
  Rat   308 KYCLVAIGRLQVTSSPVCMDMSGMSVPTE-------FLSRHNSDGIITFVDPRCISVIGYQPQDL 365

  Fly   309 IEKTLYQYIHAADIMAMRCS-HQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVF 372
            :.|.:.::.|..|...:|.| .|::..||||.:..|||.||...|:.:::.:....|..|....:
  Rat   366 LGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWLLIRTSSFTFQNPYSDEIEY 430

  Fly   373 IVSVNYVLSEREVKDLVLNEIQTGVVKREPISPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQ 437
            ::..|     ..||.|...:.:..|.:|:.:| :...:|...........:|.:....|.|:.:|
  Rat   431 VICTN-----TNVKQLQQQQAELEVHQRDGLS-SYDLSQVPVPNLPTGVHEAGKPVEKADAIFSQ 489

  Fly   438 ----------VVVVPQQSVVVQPQCAGATGQPVGPGTPVSLALSASPKLDPYFEPELPLQPAVTP 492
                      ..:...:..::....|..:.|....|:|.....|..           ....:|..
  Rat   490 ERDPRFAEMFAGISASEKKMMSSASASGSQQIYSQGSPFPAGHSGK-----------AFSSSVVH 543

  Fly   493 VPPTNNSSSSSNNNNGVWHHHHVQQQQQSGSMDHDSLSYTQLYPPLNDLVVSSSSSVGGGTASSA 557
            ||..|:..|||:....:        .|.|..::...:::|...||.                  .
  Rat   544 VPGVNDIQSSSSTGQNI--------SQISRQLNQGQVAWTGSRPPF------------------P 582

  Fly   558 GGGSSASASSSGVYSTEMQYPDTTTGNLYYNNNNHYYYDYDATVDVATSMIRPFSANSNSCSSSS 622
            |..|...:|:.|:.|:                                   .|:.|:.:|.|..|
  Rat   583 GQPSKTQSSAFGIGSS-----------------------------------HPYPADPSSYSPLS 612

  Fly   623 ESERQLSTGNA--SIVNET----------SPSQTTYSDLSHNFELSYFSDNSSQQHQHQQQQQ 673
            .......:|||  |:.|.|          ...|...|::...::..:....|.:||.|||..|
  Rat   613 SPAASSPSGNAYPSLANRTPGFAESGQSGGQFQGRPSEVWSQWQSQHHGQQSGEQHSHQQPGQ 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 HLH 26..78 CDD:238036 15/52 (29%)
PAS 102..215 CDD:279347 31/127 (24%)
PAS 102..163 CDD:214512 20/61 (33%)
PAS 278..376 CDD:238075 30/98 (31%)
PAS_3 291..377 CDD:285623 27/86 (31%)
Arnt2NP_036913.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..74 1/8 (13%)
bHLH-PAS_ARNT 62..124 CDD:381517 18/63 (29%)
PAS 137..243 CDD:395786 30/112 (27%)
PAS_11 336..436 CDD:405306 32/111 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 573..712 28/156 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47781
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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