DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sim and cky-1

DIOPT Version :9

Sequence 1:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001122849.1 Gene:cky-1 / 179743 WormBaseID:WBGene00000521 Length:676 Species:Caenorhabditis elegans


Alignment Length:707 Identity:142/707 - (20%)
Similarity:241/707 - (34%) Gaps:215/707 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLG----- 85
            :..::.|::.||::.|.|..:|..||||...|..:|.:..|:.|...:::..:.....|.     
 Worm    78 QRSTRGASKQRRDQINVEIQKLRDLLPLSDLIKDRLFQLQVMSLGCIFIRKHRYQQTVLQPQLQM 142

  Fly    86 -EAWGSSPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL--TGNSI 147
             :...||| |.||..|       .:.|.||:.:|...|||:::|:.||.:||.|..|:  .|:||
 Worm   143 LQMQMSSP-MPRGIDI-------CKALRGFMLMVTRSGKILHVSDNASEYLGHSVEEIMCQGDSI 199

  Fly   148 FEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSHTIEIEKTFFLRM 212
            ::.:...|                |...|.....|.|             |:.|...|:.|..|:
 Worm   200 YDLVDGRD----------------HGAVQAELASGPP-------------GAATFPEERVFICRL 235

  Fly   213 KCV-LAKRNAGLTTSGFKVIH---------------------C-----SGYLKARIYPDRGDGQG 250
            ... .|||.  |....|.:..                     |     |.|.:..|.|:..:|  
 Worm   236 NLARTAKRQ--LQYHKFVLFQGRYIQPAEFYQQLNAQNSQPDCDQPVFSAYCQPLINPENAEG-- 296

  Fly   251 SLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQ 315
                    ::.|::             ::|..:..||||....|...||..|:..:.|...:.|.
 Worm   297 --------MSTGNT-------------HVFSTQHYLDMKFKEADTMASQHLGFSKEQLKGMSWYG 340

  Fly   316 YIHAADIMAMRCSHQILLY--KGQVTTKYYRFLTKGGGWVWVQSYATLVHNS------RSSREVF 372
            .||...:..:...|::|..  :|.|.. ..|.....|.|:|:.:..::..|:      :..|.| 
 Worm   341 MIHPNHVPEIAHKHRLLCQEKEGSVLA-LIRLQAANGEWIWLHTVFSIRPNNELNSDGKRLRHV- 403

  Fly   373 IVSVNYVLSEREVKDLVLNEIQTGVVKREPISPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQ 437
            |...:..|::.|...|..|   :.:.......|...:.|.:......|...:.|.....:    |
 Worm   404 IHCFHQKLTDLEAATLQAN---SWIYSMRHTYPTVFSCQDSPPPSEEQQPSSPQTPPFTE----Q 461

  Fly   438 VVVVPQQSVVVQPQCAGATGQPVGPGTPVSLALSASPKLD-PYFEPELPLQPAVTPVP---PTNN 498
            ..::.:|..::        |..:.||         .|.|| ...:.|:|::|..|.:|   |.::
 Worm   462 PPMLVEQKPLI--------GAGIAPG---------FPSLDYNQIKVEIPMRPINTQIPLFTPESS 509

  Fly   499 S-SSSSNNNNGVWHHHHVQQQQQSGSMD--HDSLSYTQLYPPLNDLVVSSSSSVGGGTASSAGGG 560
            | .||::.:..:..||:      :..:|  .|.|....:.|.|.|.|                  
 Worm   510 SPESSASLHTSLLPHHN------AFPLDILEDILPSNDVLPELKDEV------------------ 550

  Fly   561 SSASASSSGVYSTEMQYPDTTTGNLYYNNNN--HYYYDYDATVDVATSMIRPFSANSNSCSSSSE 623
                   ..:.....|.|.|:..:.:.:|.|  |.:           ||...|.           
 Worm   551 -------DEILRQVEQSPATSPAHSFPSNVNFGHRH-----------SMPNAFD----------- 586

  Fly   624 SERQLSTGNASIVNETSPSQTTYSDLSHNFELSYFSDNSSQQHQHQQQQQHLMEQQH 680
                    :|.:.....|              :.|..|.:.||||..||||..:..|
 Worm   587 --------SAELYKYLGP--------------ALFDGNFAMQHQHHLQQQHQSQPNH 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simNP_524340.2 HLH 26..78 CDD:238036 14/51 (27%)
PAS 102..215 CDD:279347 27/114 (24%)
PAS 102..163 CDD:214512 18/62 (29%)
PAS 278..376 CDD:238075 25/105 (24%)
PAS_3 291..377 CDD:285623 20/93 (22%)
cky-1NP_001122849.1 PAS 161..>234 CDD:238075 26/101 (26%)
PAS 302..397 CDD:238075 22/108 (20%)
PAS_11 304..416 CDD:291273 26/113 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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