DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pic and ddb1

DIOPT Version :9

Sequence 1:NP_650257.1 Gene:pic / 41611 FlyBaseID:FBgn0260962 Length:1140 Species:Drosophila melanogaster
Sequence 2:XP_002937687.4 Gene:ddb1 / 100485735 XenbaseID:XB-GENE-967908 Length:1140 Species:Xenopus tropicalis


Alignment Length:1146 Identity:693/1146 - (60%)
Similarity:879/1146 - (76%) Gaps:12/1146 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHHYVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAVMR 65
            ||::|||||||||||.||:||:|||..||||:||:|.::||.:||||||||:||:.:.|.||||.
 Frog     1 MSYNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGKIAVME 65

  Fly    66 HFRPPDSNKDLLFILTRRYNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVIAAIDPKARV 130
            .|||...:||||||||.:||..|||.:...|.|.::|:|:|||.|.:|.|||.|:|..|||..|:
 Frog    66 LFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPDCRM 130

  Fly   131 IGMCLYQGLFTIIPMDKDASELKATNLRMDELNVYDVEFLHGCLNPTVIVIHKDSDGRHVKSHEI 195
            ||:.||.|||.:||:::|..||||.|:|::||:|.||:||:.|..||:..:::|..|||||::|:
 Frog   131 IGLRLYDGLFKVIPLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICFVYQDPQGRHVKTYEV 195

  Fly   196 NLRDKEFMKIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDGSNYHAVAPLTFRQSTINC 260
            :||:|||.|..|||:|||.||:|:|.||.|.||.|:||:|||.||:|..|.|:||...:||||.|
 Frog   196 SLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVC 260

  Fly   261 YARVSSNGLRYLLGNMDGQLYMLFLGTAETSKG-VTVKDIKVEQLGEISIPECITYLDNGFLYIG 324
            :.||..||.|||||:|:|:|:||.|...|...| ||:||::||.|||.||.||:||||||.:::|
 Frog   261 HNRVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLRVELLGETSIAECLTYLDNGVVFVG 325

  Fly   325 ARHGDSQLVRLNSEAID-GSYVVPVENFTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRII 388
            :|.||||||:|.:|:.: |||||.:|.||||.||:|:.||||:||||||::||||:||:||||||
 Frog   326 SRLGDSQLVKLTAESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII 390

  Fly   389 RIGIGIQEHACIDLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEEVEETEIPGFASD 453
            |.||||.|||.||||||||:|.|:|..|... ::||||:|||.||:|||:|||||||::.||..|
 Frog   391 RNGIGIHEHASIDLPGIKGLWPLRVAADRDT-DDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDD 454

  Fly   454 LQTFLCSNVDYDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVVSCNTTQILVASACDIFYI 518
            .|||.|.||.:.||||:||.|||||:...::||:||:....|.:.|.|||:.|:|:|....::|:
 Frog   455 QQTFFCGNVAHQQLIQITSASVRLVAQNPQSLVSEWKEPQGRKVSVCSCNSRQVLLAVGRVLYYL 519

  Fly   519 VIEDGSLREQSRRTLAYEVACLDITPLDETQKKSDLVAVGLWTDISAVILSLPDLETIYTEKLSG 583
            .|..|.||:.|...:.:||||||:|||..:...|.|.|:||||||||.|||||..:.::.|.|.|
 Frog   520 EIHPGELRQISCTEMEHEVACLDVTPLGGSDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGG 584

  Fly   584 EIIPRSILMTTFEGIHYLLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFRSLSTTNV 648
            ||||||||||:||..||||||||||:::||.::..||.|:|:||||||||||.||||||||||||
 Frog   585 EIIPRSILMTSFESSHYLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRTFRSLSTTNV 649

  Fly   649 FACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAYPDSLALANKNAVILGTIDEIQKLHIRT 713
            ||||||||||||||||||||||||||||:||.||::.|||||||||.:.:.:|||||||||||||
 Frog   650 FACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRT 714

  Fly   714 VPLGEGPRRIAYQESSQTFAVSTLRIDVH-GRGGAKPLRNSASTQA--QNITCSSNFLPKPGGGN 775
            |||.|.||:|.|||.||.|.|.:.||:|. ..||:.|||.||||||  .:::||..|     .|:
 Frog   715 VPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGSSPLRPSASTQALSSSVSCSKLF-----SGS 774

  Fly   776 STAANAEVGQEIDVHNLLVIDQNTFEVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIPE 840
            ::......|:|::|||||:|||:||||||.|||:..|...||:|.|||.||.||:||.|::|.|:
 Frog   775 TSPHETSFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAMVYPD 839

  Fly   841 EPEPKVGRIIIFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELRMECN 905
            |.|||.|||::|.|::.||..|||.:|.|..|::||||||:||.|.|.|||||||.|||||.|||
 Frog   840 EAEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECN 904

  Fly   906 IQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWMRAVEILDDDTFLGSE 970
            ..|.|.||:||.|||||||||||||:.||.:|.|||.|.|||||..|.||.||||||||.|||:|
 Frog   905 HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE 969

  Fly   971 TNGNLFVCQKDSAATTDEERQLLPELARFHLGDTVNVFRHGSLVMQNVGERTTPINGCVLYGTCN 1035
            ...||||||||||||||||||.|.|:..||||:.||||.||||||||:||.:.|..|.||:||.|
 Frog   970 NAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSPPTQGSVLFGTVN 1034

  Fly  1036 GAIGIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTYYRNFQINSKVEPSEGFIDGDLIESFLD 1100
            |.||:||.:.:.:|:.|..::.||.|:|||||||||:::|:|....|.||:.|||||||||||||
 Frog  1035 GMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLD 1099

  Fly  1101 LSRDKMRDAVQGLEL-TLNGERKSADVEDVIKIVEDLTRMH 1140
            :||.||::.:..|:: ..:|.::...|:|:||:||:|||:|
 Frog  1100 ISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEELTRIH 1140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
picNP_650257.1 SFT1 13..1139 CDD:227490 681/1131 (60%)
MMS1_N 75..542 CDD:287414 265/468 (57%)
CPSF_A 792..1100 CDD:281209 198/307 (64%)
ddb1XP_002937687.4 MMS1_N 75..543 CDD:402179 265/468 (57%)
CPSF_A 791..1099 CDD:397339 198/307 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 542 1.000 Domainoid score I266
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1448
Inparanoid 1 1.050 1343 1.000 Inparanoid score I142
OMA 1 1.010 - - QHG55223
OrthoDB 1 1.010 - - D146622at2759
OrthoFinder 1 1.000 - - FOG0005098
OrthoInspector 1 1.000 - - oto102793
Panther 1 1.100 - - LDO PTHR10644
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3618
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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