DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and tmprss4

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_012822151.1 Gene:tmprss4 / 733869 XenbaseID:XB-GENE-940762 Length:785 Species:Xenopus tropicalis


Alignment Length:296 Identity:95/296 - (32%)
Similarity:136/296 - (45%) Gaps:41/296 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 LADKHVLAQRISATKCQEYNAAARRLHLTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHMAALG 204
            |:||.:.........|......:.|.....||.    ||     ..|:||:.:....:|...:|.
 Frog   515 LSDKSIQVNPTVWGSCTSGQVVSLRCAACGTGH----KQ-----ERIIGGSNSDILKYPWQVSLQ 570

  Fly   205 WTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPD--MVRLGARQLNETSATQQDIKIL 267
            :      ..|.|   |||::::..::|.||||...|.:..|  .|:.|...|.....|..|    
 Frog   571 Y------MGQHI---CGGSILNSRWILCAAHCFDRGQRQVDRWRVQYGITTLTYLFGTFVD---- 622

  Fly   268 IIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLPELQIPTVVAA-----GWGRT-EFL 326
            .|.|:.||.:....:|||||:|...:..|..|:|.|   ||......||.|     |||.| |..
 Frog   623 KIFLNSKYVTDQKPNDIALLQLKSDIVASASVQPVC---LPGYDNNLVVGAVLYVTGWGHTVEGG 684

  Fly   327 GAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPE 391
            .|.::.|::|.:.::...||.|.|..:      |::...|||.:.||.||||||||||:.:|...
 Frog   685 AALASQLQEVAISLISSTTCNQEYGGQ------ILDTMLCAGKIAGGADTCQGDSGGPLVSLGQS 743

  Fly   392 YNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWI 427
            .:...  |||.|:|..|..||..||||.:.|:|:||
 Frog   744 SHWEQ--VGIVSWGDGCGRPNRVGVYTDVQSFLNWI 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 86/250 (34%)
tmprss4XP_012822151.1 PHA03247 <32..358 CDD:223021
LDLa 402..434 CDD:238060
SRCR_2 453..545 CDD:470597 5/29 (17%)
Tryp_SPc 551..777 CDD:214473 84/249 (34%)
Blue background indicates that the domain is not in the aligned region.

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