DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and cfd

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001018368.1 Gene:cfd / 553553 ZFINID:ZDB-GENE-050522-411 Length:249 Species:Danio rerio


Alignment Length:257 Identity:83/257 - (32%)
Similarity:118/257 - (45%) Gaps:37/257 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRLG 250
            |.||...:....|:||::.|..         |..|||.|:|..:|::||||...|......|.||
Zfish    21 ITGGQEAKAHSRPYMASVQWNG---------KHECGGFLISSQWVMSAAHCFQDGRTSGVKVVLG 76

  Fly   251 ARQLNETSATQQ--DIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLPELQIP 313
            |..|:....|:|  |.:   :..||.:..|.|.:||||:||.:.|..|:.|:|. .:|..|...|
Zfish    77 AHSLSGAEDTKQTFDAE---VYNHPDFSISNYDNDIALIKLDKPVTQSDAVKPV-KFQRDETADP 137

  Fly   314 ----TVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTC--KQIYRKERRLPRGIIEGQFCAGYLPG 372
                .|..||||....:|.:.:.|.::.:.|:.:..|  ...|.::      ......||.  ..
Zfish   138 KEAAVVETAGWGSLNNMGGRPDKLHELSIPVMERWRCGRADFYGEK------FTSNMLCAA--DK 194

  Fly   373 GRDTCQGDSGGPIHALLPEYNCVAFVVGITS-FGKFCAAPNAPGVYTRLYSYLDWIEKIAFK 433
            .:|||.||||||:     .|.  ..|||||| .||.|.:...||:||.:..|..||:....|
Zfish   195 RKDTCDGDSGGPL-----LYR--GIVVGITSNGGKKCGSSRKPGLYTIISHYASWIDTTTTK 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 82/252 (33%)
cfdNP_001018368.1 Tryp_SPc 21..246 CDD:238113 82/252 (33%)
Blue background indicates that the domain is not in the aligned region.

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