DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Hgfac

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_006504094.1 Gene:Hgfac / 54426 MGIID:1859281 Length:658 Species:Mus musculus


Alignment Length:493 Identity:129/493 - (26%)
Similarity:186/493 - (37%) Gaps:150/493 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 PVATIGEDVDDQDTEDEE--SYLKFGDDAEVRTSVSEGLHEGAFC----RRSFDGRSGYCILAYQ 109
            |:|..|:|...:...||.  .|.:.||.   ...||||..|...|    .|..|.....| |:..
Mouse   186 PLAFTGKDCGTEKCFDETRYEYFEVGDH---WARVSEGHVEQCGCMEGQARCEDTHHTAC-LSSP 246

  Fly   110 CLHVIREYRVHGTRIDICT--------HRNNVPVICCPLAD----KHVLAQRISATKCQEYNA-- 160
            ||:....:.:.||...:||        ..|.||...|.|.:    :.|.:...|...|..:|:  
Mouse   247 CLNGGTCHLIVGTGTSVCTCPLGYAGRFCNIVPTEHCFLGNGTEYRGVASTAASGLSCLAWNSDL 311

  Fly   161 AARRLHLTDTG-----------------------------RTFSGKQC----------------- 179
            ..:.||:....                             ...|.:.|                 
Mouse   312 LYQELHVDSVAAAVLLGLGPHAYCRNPDKDERPWCYVVKDNALSWEYCRLTACESLARVHSQTPE 376

  Fly   180 --------VPSV---------------PLIVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCG 221
                    .|:|               |.|:||:.:..|..|.:||: :...|         .|.
Mouse   377 ILAALPESAPAVRPTCGKRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGNS---------FCA 431

  Fly   222 GALVSELYVLTAAHCATSGSKPPDMVR--LGARQLNETSATQQDIKI-------LIIVLHPKYRS 277
            |:||...:|::|||| .:.|.|.|.:.  ||....|.|:...|...|       |..|.:|.   
Mouse   432 GSLVHTCWVVSAAHC-FANSPPRDSITVVLGQHFFNRTTDVTQTFGIEKYVPYTLYSVFNPN--- 492

  Fly   278 SAYYHDIALLKLTRR-----VKFSEQVRPACLWQLPEL--QIPT---VVAAGWGRTEFL------ 326
               .||:.|::|.::     |: |:.|:|.|   |||.  ..||   ...||||..:.:      
Mouse   493 ---NHDLVLIRLKKKGERCAVR-SQFVQPIC---LPEAGSSFPTGHKCQIAGWGHMDEMQSSTDV 550

  Fly   327 GAKSNALRQVDLDVVPQMTCK--QIYRKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALL 389
            .:.||:|.:..:.:|....|.  ::|..:      |.....||||.....|.||||||||   |:
Mouse   551 SSYSNSLLEALVPLVADHKCSSPEVYGAD------ISPNMLCAGYFDCKSDACQGDSGGP---LV 606

  Fly   390 PEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWI 427
            .|.|.||::.||.|:|..|...|.||||||:.:|:|||
Mouse   607 CEKNGVAYLYGIISWGDGCGRLNKPGVYTRVANYVDWI 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829 14/57 (25%)
Tryp_SPc 186..430 CDD:238113 88/269 (33%)
HgfacXP_006504094.1 FN2 99..145 CDD:128373
EGF_CA 159..194 CDD:238011 3/7 (43%)
FN1 197..237 CDD:238018 12/42 (29%)
EGF_CA 242..275 CDD:238011 8/33 (24%)
Kringle 283..364 CDD:395005 10/80 (13%)
Tryp_SPc 406..646 CDD:238113 88/269 (33%)
Blue background indicates that the domain is not in the aligned region.

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