DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and ovch1

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_073801826.1 Gene:ovch1 / 393114 ZFINID:ZDB-GENE-040426-834 Length:582 Species:Danio rerio


Alignment Length:247 Identity:82/247 - (33%)
Similarity:122/247 - (49%) Gaps:26/247 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPP--DMVR 248
            |:||.......:|...:|.:        .|:. .||||::.:|:|:||.||.....||.  :.| 
Zfish    57 IIGGKEAWAHSWPWQVSLQY--------NDVP-TCGGAILDQLWVITAGHCFKRYKKPSMWNAV- 111

  Fly   249 LGARQL-NETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLW--QLPEL 310
            :|...| |...::::.|::..|..|..|......:|||||||...:.||:.|||..::  .||.|
Zfish   112 VGLHNLDNANESSRESIQVQKIFSHKNYNQKTNENDIALLKLQSPLVFSKFVRPIGVFNNDLPPL 176

  Fly   311 QIPTVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRD 375
            ...||  .|||.....|.:::.|::|::.|.....|.:.||.:      :::...|||...||.|
Zfish   177 VTCTV--TGWGSVTENGPQASRLQEVNVTVYEPQKCNRFYRGK------VLKSMICAGANEGGMD 233

  Fly   376 TCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWI 427
            .||||||||:.....|...:|   |:.|:|..|.....|||||.||.|..|:
Zfish   234 ACQGDSGGPLSCFDGERYKLA---GVVSWGVGCGRAQKPGVYTTLYHYRQWM 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 82/247 (33%)
ovch1XP_073801826.1 None
Blue background indicates that the domain is not in the aligned region.

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