DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and CG16998

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_648134.1 Gene:CG16998 / 38847 FlyBaseID:FBgn0035795 Length:258 Species:Drosophila melanogaster


Alignment Length:247 Identity:82/247 - (33%)
Similarity:118/247 - (47%) Gaps:34/247 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPD--MVR 248
            ||||......|.|.:|:: ...|:        :.|..||::.|:::||.||.    :.||  .||
  Fly    25 IVGGVEVPIHLTPWLASI-TVHGN--------YSCSSALITSLWLVTAGHCV----QYPDSYSVR 76

  Fly   249 LGARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLPELQI- 312
            .|:   ..|....|...::.::|||.:......:|||||||.:.......::...| .||.|.| 
  Fly    77 AGS---TFTDGGGQRRNVVSVILHPDFNLRTLENDIALLKLDKSFTLGGNIQVVKL-PLPSLNIL 137

  Fly   313 -PTVVAAGWGRTEFLGAKSN-ALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRD 375
             .|::.||||..:...::|. .||...:.|:.|..|:::|   ..|.|.|.:...||.  ..|||
  Fly   138 PRTLLVAGWGNPDATDSESEPRLRGTVVKVINQRLCQRLY---SHLHRPITDDMVCAA--GAGRD 197

  Fly   376 TCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWI 427
            .|.||||.|:......|       ||.||...||.|:.|||||||.:|:.||
  Fly   198 HCYGDSGAPLVHRGSSY-------GIVSFAHGCADPHFPGVYTRLANYVTWI 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 82/247 (33%)
CG16998NP_648134.1 Tryp_SPc 24..242 CDD:214473 80/245 (33%)
Blue background indicates that the domain is not in the aligned region.

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