DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snk and sphinx1

DIOPT Version :9

Sequence 1:NP_001097766.1 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_729255.2 Gene:sphinx1 / 318005 FlyBaseID:FBgn0052383 Length:253 Species:Drosophila melanogaster


Alignment Length:289 Identity:53/289 - (18%)
Similarity:104/289 - (35%) Gaps:104/289 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 PLIVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTA----------AHCAT 238
            |.|.||...:.....::..:.:.:   |:...:.:| .|.::|..::||.          .|.|:
  Fly    24 PRIAGGYRAKTFTIIYLVGIVYFK---SQTSSLNYG-AGTIISNQWILTVKTVLKYSYIEVHLAS 84

  Fly   239 SGS-KPPDMVRLGARQLNETSATQQDIKILIIVLHPKYRSSAYY-----HDIALLKLTRRVKFSE 297
            ..| :..|::|:                         |:.:..:     |.|||:|...: ||..
  Fly    85 RRSYRGFDIIRI-------------------------YKENFRFHYDNDHVIALVKCPYQ-KFDR 123

  Fly   298 QVRPACLWQLPELQIPT------------VVAAGWGRTEFLGAK-SNALRQVDLDVVPQMTCKQI 349
                    ::..:::|.            .:..|:| ||...|| ...:|.::::|:....|.:.
  Fly   124 --------RMDRVRVPAYDTRFERYVGNMTMVCGYG-TEKRHAKLPEWMRCIEVEVMNNTECAKY 179

  Fly   350 YRKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHA------------LLPEYNCVAFVVGIT 402
            |...:..       :.|... .|.:..|:||.||.:..            |:|| ||        
  Fly   180 YTPLKWY-------EMCTSG-EGFKGVCEGDIGGAVVTMGPNPTFIGIIWLMPE-NC-------- 227

  Fly   403 SFGKFCAAPNAPGVYTRLYSYLDWIEKIA 431
            |.|       .|.|:.|:..::.||::::
  Fly   228 SIG-------YPSVHIRVSDHIKWIKRVS 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_001097766.1 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 52/284 (18%)
Tryp_SPc 186..427 CDD:214473 50/281 (18%)
sphinx1NP_729255.2 Tryp_SPc 25..245 CDD:214473 50/282 (18%)
Tryp_SPc 26..248 CDD:304450 52/284 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437052
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24260
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.