DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Gzma

DIOPT Version :9

Sequence 1:NP_001097766.1 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_703198.1 Gene:Gzma / 266708 RGDID:628640 Length:261 Species:Rattus norvegicus


Alignment Length:255 Identity:84/255 - (32%)
Similarity:119/255 - (46%) Gaps:35/255 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGG-TPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRL 249
            |:|| |...|.. |:|..|      ..|...|   |.|||:::.:||||||| ..|.|  ..|.|
  Rat    29 IIGGDTVVPHSR-PYMVLL------KLKPDSI---CAGALIAKNWVLTAAHC-IPGKK--SEVIL 80

  Fly   250 GARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLP----EL 310
            ||..:.: ...||.:.:.....:|.:....:..|:.||:|.::...::.|   .:..||    ::
  Rat    81 GAHSIKK-EPEQQILSVKKAYPYPCFDKHTHEGDLQLLRLKKKATLNKNV---AILHLPKKGDDV 141

  Fly   311 QIPT-VVAAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGR 374
            :..| ...|||||.......|:.||:|::.|:.:..|..  .|.......|.....|||.|.||:
  Rat   142 KPGTRCHVAGWGRFHNKSPPSDTLREVNITVIDRKICND--EKHYNFNPVIGLNMICAGNLRGGK 204

  Fly   375 DTCQGDSGGPIHALLPEYNCVAFVVGITSFG--KFCAAPNAPGVYTRLY-SYLDWIEKIA 431
            |:|.||||||:       .|.....|||:||  ..|..|..||:||.|. .:||||.|.|
  Rat   205 DSCYGDSGGPL-------LCEGIFRGITAFGLEGRCGDPKGPGIYTLLSDKHLDWIRKTA 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_001097766.1 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 82/252 (33%)
Tryp_SPc 186..427 CDD:214473 80/249 (32%)
GzmaNP_703198.1 Tryp_SPc 28..253 CDD:214473 80/249 (32%)
Tryp_SPc 29..256 CDD:238113 82/252 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D476534at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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