DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Ctrb1

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_036668.2 Gene:Ctrb1 / 24291 RGDID:2444 Length:263 Species:Rattus norvegicus


Alignment Length:270 Identity:84/270 - (31%)
Similarity:128/270 - (47%) Gaps:44/270 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 LTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWG---CGGALVSEL 228
            ||...|..:|:..:|             |.:|...:|          || |.|   |||:|:||.
  Rat    28 LTGLSRIVNGEDAIP-------------GSWPWQVSL----------QD-KTGFHFCGGSLISED 68

  Fly   229 YVLTAAHCATSGSKPPDMVRLGARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRV 293
            :|:|||||   |.|..|:|..|...........|.:||..:..:||:......:||.||||....
  Rat    69 WVVTAAHC---GVKTSDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPA 130

  Fly   294 KFSEQVRPACLWQLPELQIPTVVAA--GWGRTEFLGAKS-NALRQVDLDVVPQMTCKQIYRKERR 355
            :|||.|...||..:.:...|..|.|  |||:|::...|: ..|:|..|.:|.:..||:.:..:  
  Rat   131 QFSETVSAVCLPNVDDDFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSWGSK-- 193

  Fly   356 LPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRL 420
                |.:...|||  ..|..:|.||||||   |:.:.:.|..:.||.|:|....:.:.|.||:|:
  Rat   194 ----ITDVMICAG--ASGVSSCMGDSGGP---LVCQKDGVWTLAGIVSWGSGVCSTSTPAVYSRV 249

  Fly   421 YSYLDWIEKI 430
            .:.:.|:::|
  Rat   250 TALMPWVQQI 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 78/249 (31%)
Ctrb1NP_036668.2 Tryp_SPc 34..259 CDD:238113 80/262 (31%)
Blue background indicates that the domain is not in the aligned region.

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