DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Habp2

DIOPT Version :9

Sequence 1:NP_001097766.1 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001316864.1 Gene:Habp2 / 226243 MGIID:1196378 Length:554 Species:Mus musculus


Alignment Length:388 Identity:111/388 - (28%)
Similarity:161/388 - (41%) Gaps:87/388 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 EESYLKFGDDAEVRTSVSEGLHEGAFCRRSFDGRSGYCILAYQCLHVIREYRVHGTRIDICTHRN 131
            :|:|..|.:|||     :.|:.|..|||........:|.:......|..||         |    
Mouse   219 QETYNMFMEDAE-----THGIAEHNFCRNPDGDHKPWCFVKVNSEKVKWEY---------C---- 265

  Fly   132 NVPVICCPLADKHVLAQRI-----------SATKCQEYNAAARRLHLTDTGRTFSGKQCVPSVPL 185
              .|..||:.|.....:.:           |..|.:....|.:|::                   
Mouse   266 --DVTVCPVPDTPNPVESLLEPVMELPGFESCGKTEVAEHAVKRIY------------------- 309

  Fly   186 IVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWG--CGGALVSELYVLTAAHCATSGSKPPDMVR 248
              ||..:..|..|...:|   |.|......:..|  |||||:...:|||||||....:|...:| 
Mouse   310 --GGFKSTAGKHPWQVSL---QTSLPLTTSMPQGHFCGGALIHPCWVLTAAHCTDINTKHLKVV- 368

  Fly   249 LGARQLNETSATQQDIKILIIVLHPKY--RSSAYYHDIALLKLT----RRVKFSEQVRPACLWQL 307
            ||.:.|.:|.:.:|..::..|:.:.:|  |....::|||||||.    .....|..|:..|   |
Mouse   369 LGDQDLKKTESHEQTFRVEKILKYSQYNERDEIPHNDIALLKLKPVGGHCALESRYVKTVC---L 430

  Fly   308 PELQIPTVV---AAGWGRTEFLGAKSNALRQVDLDVVPQMTC--KQIYRKERRLPRGIIEGQFCA 367
            |....|:..   .:|||.|| .|..|..|....:.::....|  :|:|      ...|.:...||
Mouse   431 PSDPFPSGTECHISGWGVTE-TGEGSRQLLDAKVKLIANPLCNSRQLY------DHTIDDSMICA 488

  Fly   368 GYL--PGGRDTCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWIE 428
            |.|  ||. ||||||||||   |..|.:...:|.||.|:|:.|.  ..|||||::..:|:||:
Mouse   489 GNLQKPGS-DTCQGDSGGP---LTCEKDGTYYVYGIVSWGQECG--KKPGVYTQVTKFLNWIK 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_001097766.1 CLIP 93..139 CDD:197829 8/45 (18%)
Tryp_SPc 186..430 CDD:238113 87/258 (34%)
Tryp_SPc 186..427 CDD:214473 85/255 (33%)
Habp2NP_001316864.1 EGF_CA 67..103 CDD:238011
EGF_CA 150..182 CDD:238011
KR 187..271 CDD:238056 17/71 (24%)
Tryp_SPc 308..547 CDD:238113 87/279 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 119 1.000 Inparanoid score I4773
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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