DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Gzmb

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_612526.2 Gene:Gzmb / 171528 RGDID:620018 Length:248 Species:Rattus norvegicus


Alignment Length:254 Identity:86/254 - (33%)
Similarity:120/254 - (47%) Gaps:41/254 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGGTPTRHGLFPHMAALG-WTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRL 249
            |:||...:....|:||.|. ..:.||||.      |||.|:.|.:|||||||  ||||  ..|.|
  Rat    21 IIGGHEAKPHSRPYMAYLQIMDEYSGSKK------CGGFLIREDFVLTAAHC--SGSK--INVTL 75

  Fly   250 GARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLPELQI-- 312
            ||..:.|....||.|.::.|:.||.|.|....:||.||||..:.|.|..|:|.   .||...:  
  Rat    76 GAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPL---NLPRRNVKV 137

  Fly   313 ---PTVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTC----KQIYRKERRLPRGIIEGQFCAGYL 370
               .....||||:...:|..|:.|::|:|.|.....|    |..:.|         ..:.|||..
  Rat   138 KPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDK---------ANEICAGDP 193

  Fly   371 PGGRDTCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWIEK 429
            ...|.:.:||||||:       .|.....||.|:|:  ...:.|..:|::.::|.||:|
  Rat   194 KIKRASFRGDSGGPL-------VCKKVAAGIVSYGQ--NDGSTPRAFTKVSTFLSWIKK 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 86/254 (34%)
GzmbNP_612526.2 Tryp_SPc 21..244 CDD:238113 86/254 (34%)
Blue background indicates that the domain is not in the aligned region.

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