DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Gzmc

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_599159.1 Gene:Gzmc / 171290 RGDID:620019 Length:248 Species:Rattus norvegicus


Alignment Length:255 Identity:82/255 - (32%)
Similarity:108/255 - (42%) Gaps:43/255 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRLG 250
            |:||........|:||...:...:|.|.     .|||.||.:.:|||||||.....    .|.||
  Rat    21 IIGGNEVSPHSRPYMAYFEFLNDNGKKT-----FCGGFLVRDNFVLTAAHCRGRSM----TVTLG 76

  Fly   251 ARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLPELQIP-- 313
            |..:.....|||.|.:.....||.|......:||.||||.|..|.:..|||        |.:|  
  Rat    77 AHNIKAKEKTQQIIPVANATPHPAYNPDKRSNDIMLLKLVRSAKRTSAVRP--------LNLPRR 133

  Fly   314 --------TVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIE-GQFCAGY 369
                    ....||||:....|...|.||:|:|.|.....|      |.:..|..|: .:.|.|.
  Rat   134 NAHVKPGDVCYMAGWGKITPQGEFPNTLREVELTVQKDRVC------ESQFQRSYIKASEICVGD 192

  Fly   370 LPGGRDTCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWIEK 429
            ......:.:.|||||:       .|.....||.|:||  ...:||.|:||:.|:|.||:|
  Rat   193 SKTKGASFEEDSGGPL-------VCKKAAAGIVSYGK--TDGSAPQVFTRVLSFLSWIKK 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 82/255 (32%)
GzmcNP_599159.1 Tryp_SPc 21..244 CDD:238113 82/255 (32%)
Blue background indicates that the domain is not in the aligned region.

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