DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snk and LOC1277089

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_316522.5 Gene:LOC1277089 / 1277089 VectorBaseID:AGAMI1_006180 Length:281 Species:Anopheles gambiae


Alignment Length:260 Identity:68/260 - (26%)
Similarity:116/260 - (44%) Gaps:39/260 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 PLIVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSK----PP 244
            |.:.|||.|..|.:|....:        :...|...|.|.:|:..:|||||.|..:.:.    .|
Mosquito    27 PRVTGGTATLLGQYPSAVII--------ETPYIPQNCMGTVVNRQHVLTAASCVMNPTTFVMINP 83

  Fly   245 DMVRLGARQLNETS-ATQQDIK-ILIIVLHPKYRSSAYYHDIALLKLTRRVKFSE---QVRPACL 304
            ..:|:.|..:|... :|::::: ::...:||.|......:::|:|::.  |.|.|   .:.||.|
Mosquito    84 FWLRVIAGDINIVPVSTRREVRQVIRSYVHPNYNRLTDGNNLAVLRVD--VPFPEFHNTIEPALL 146

  Fly   305 WQLPELQIPTVVAAGWGRTEFLGAKSNALRQVDLDVVPQ-----MTCKQIYRKERRLPRGIIEGQ 364
            ...........|.||||.|:   .:..|:.:.:..||.|     ::|........|:.:.:|   
Mosquito   147 NARILADNTQCVFAGWGATQ---NQVTAVVRPNQFVVTQPILATVSCNAANVHNNRVQQTMI--- 205

  Fly   365 FCAGYLPGGRD-TCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWIE 428
             |||.|...:: .|:|:.||.::       |...:.|:.:||..|...|.||||..:..|..|||
Mosquito   206 -CAGALAQSQNAVCRGNMGGGLY-------CNGRLTGVLAFGMGCGVANQPGVYMDVRQYTQWIE 262

  Fly   429  428
            Mosquito   263  262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 67/258 (26%)
LOC1277089XP_316522.5 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.