DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and f12

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_017947702.2 Gene:f12 / 100493769 XenbaseID:XB-GENE-1004811 Length:597 Species:Xenopus tropicalis


Alignment Length:225 Identity:47/225 - (20%)
Similarity:72/225 - (32%) Gaps:85/225 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SGTVQQIESIIQTIESK------------IDVSSQQHSPASNSSSTKSEDSGLDDGPKKSVTSAK 60
            ||..||.|::.:...|:            :.||..:..|:.:..:.....|...|||.:.|.   
 Frog     3 SGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPTEYVL--- 64

  Fly    61 PISRKSSRMSQSSGVSLPPVLEQLEHMI------------------------ISDDWLGSE---- 97
                   ::|.:.....|.::|...|:|                        :|.| .|||    
 Frog    65 -------KISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVD-SGSEIKSY 121

  Fly    98 ----------------STSPSGL----KQHAQVAKTRSR-EGQKLSELGR-----TLVTSASLKS 136
                            ..||..|    |..|::.||..| ...|||.|.|     .|.....|:.
 Frog   122 LVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVPLLEK 186

  Fly   137 YIDLLSSHHRQSIASWLYGNVNHVFSNLFR 166
            |:..|..:..:.|       |.||. :||:
 Frog   187 YLYALGQNRNREI-------VEHVI-HLFK 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829 19/75 (25%)
Tryp_SPc 186..430 CDD:238113
f12XP_017947702.2 FN2 40..87 CDD:238019 11/56 (20%)
EGF_CA 95..129 CDD:238011 5/34 (15%)
KR 213..298 CDD:214527
Tryp_SPc 359..595 CDD:238113
Blue background indicates that the domain is not in the aligned region.

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