DRSC/TRiP Functional Genomics Resources

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Protein Alignment snk and Mcpt1l1

DIOPT Version :10

Sequence 1:NP_524338.2 Gene:snk / 41607 FlyBaseID:FBgn0003450 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001264597.1 Gene:Mcpt1l1 / 100360872 RGDID:2321286 Length:260 Species:Rattus norvegicus


Alignment Length:247 Identity:85/247 - (34%)
Similarity:119/247 - (48%) Gaps:27/247 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IVGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRLG 250
            |:||..:|....|:||.|..|...|.|..     |||.||:..:|:|||||  .|.:  ..|.||
  Rat    21 IIGGVESRPHSRPYMAHLEITTERGYKAT-----CGGFLVTRQFVMTAAHC--KGRE--TTVTLG 76

  Fly   251 ARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACLWQLPELQIPTV 315
            ...:::|.:|||.||:...::||.|...:..|||.||||.::.|.:..|....|.|..:...|..
  Rat    77 VHDVSKTESTQQKIKVEKQIVHPNYNFYSNLHDIMLLKLQKKAKVTPAVDVIPLPQPSDFLKPGK 141

  Fly   316 V--AAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRDTCQ 378
            :  |||||:|......||.||:|...::.:..||..:......       |.|.|.....|...:
  Rat   142 MCRAAGWGQTGVTKPTSNTLREVKQRIMDKEACKNYFHYNYNF-------QVCVGSPRKIRSAYK 199

  Fly   379 GDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWIEKI 430
            ||||||:       .|.....||.|:|:..|.|  |.|:||:..|:.||.|:
  Rat   200 GDSGGPL-------VCAGVAHGIVSYGRGDAKP--PAVFTRISPYVPWINKV 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkNP_524338.2 CLIP 93..139 CDD:197829
Tryp_SPc 186..430 CDD:238113 84/245 (34%)
Mcpt1l1NP_001264597.1 Tryp_SPc 21..242 CDD:238113 84/245 (34%)
Blue background indicates that the domain is not in the aligned region.

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