DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ry and AAO3

DIOPT Version :9

Sequence 1:NP_524337.1 Gene:ry / 41605 FlyBaseID:FBgn0003308 Length:1335 Species:Drosophila melanogaster
Sequence 2:NP_001077966.1 Gene:AAO3 / 817257 AraportID:AT2G27150 Length:1332 Species:Arabidopsis thaliana


Alignment Length:1420 Identity:448/1420 - (31%)
Similarity:675/1420 - (47%) Gaps:219/1420 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LVFFVNGKKVTEVSPDPECTLLTFLREKLRLCGTKLGCAEGGCGACTVMVSRLDRRANKIRHLAV 70
            |.|.|||::....|.||..|||.|||........||||.|||||||.|::|:.|...::::...:
plant     3 LEFAVNGERFKIDSVDPSTTLLEFLRLNTPFKSVKLGCGEGGCGACLVVLSKYDPELDQVKECCI 67

  Fly    71 NACLTPVCSMHGCAVTTVEGIGSTKTRLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRNAEQPS 135
            |:|||.:||::||::||.||:|:||...||:.:|.|..|.|||||||||:.:|:|:.|.|||..|
plant    68 NSCLTLLCSVNGCSITTSEGLGNTKKGFHPIHKRFAGFHASQCGFCTPGMCISLYSSLANAENNS 132

  Fly   136 MRDL-----EVAFQGNLCRCTGYRPILEGYKTFTKEFACGMGEKCCKVSGKGCGTDA-----ETD 190
            .:|.     |.:..||||||||||||::..|:|..:           |..:..|.::     |:.
plant   133 SKDFTVSEAEKSVSGNLCRCTGYRPIVDACKSFASD-----------VDIEDLGLNSFWKKGESK 186

  Fly   191 DKLFERSEFQPLDPSQEPI-FPPELQLSDAFDSQSLIFSSD--RVTWYRPTNLEEL---LQLKAK 249
            :.:|:  ...|.:|....: ||..|:..:..|:     .||  :..|..|.::.||   ::....
plant   187 EVMFK--NLPPYNPKDHLVTFPEFLKKKEKVDN-----GSDHLKYRWTTPFSVAELHNIMEAANS 244

  Fly   250 HPAAKLVVGNTEVGV---EVKFKHFLYPHLINPTQVKELLEIKENQDGIYFGAAVSLME-IDALL 310
            ..:.|||||||..|.   |.:|..:     |:.:.:.|:..||:::.||..||||::.. |||| 
plant   245 GDSLKLVVGNTGTGYYKDEERFDRY-----IDISNIPEMSMIKKDEKGIEIGAAVTISNAIDAL- 303

  Fly   311 RQRIEQLPESETR---LFQCTVDMLHYFAGKQIRNVACLGGNIMTGS----PISDMNPVLSAAGA 368
                    |.|::   :|:.....:.....:.|||...:|||::...    | ||:..:|.|..|
plant   304 --------EKESKSSYVFKKMATHMEKIGNRSIRNSGSIGGNLVMAQSRKFP-SDVTTLLLAVDA 359

  Fly   369 QLEVASFVDGKLQKRSVHMGTGFFTGYRRN-------------VIEAHEVLLGIHFRK-TTP--D 417
                           ||:|..|     |:.             |:::..|||.:.... |.|  |
plant   360 ---------------SVYMLNG-----RKTEKVTLQEFLELSPVLDSKRVLLKVEIPSWTAPSGD 404

  Fly   418 QYIVAFKQARRRDDDIAIVNAAINVRF---------EEKSNIVAEISMAFGGM-APTTVLAPRTS 472
            .....|:..|.....|......:|..|         ..|...|.:..:|||.. ...::.|....
plant   405 DTEFLFESYRAAPRSIGNALPYLNAAFLALVSRQEASRKGVTVEKCFLAFGSYGGDHSIRAIEVE 469

  Fly   473 QLMVGQEWSHQ-LVERVA----------ESLCTELPLAASAPGGMIAYRRALVVSLFFKAYLAIS 526
            ..:.|:..|:. |.|.|.          ::|.:|             ||::|.|...|:.:    
plant   470 TFLTGKLLSYSVLYEAVGLLKGIIVPGKDTLHSE-------------YRKSLAVGYLFEFF---- 517

  Fly   527 LKLSKSG--ITSSDALPSEERSGAETFHT-PVLKSAQLFERVCSDQPICDPIGRPKVHAAALKQA 588
            ..|.:||  |.|.|:......|..:|..: |.|.|:|   :|...... .|||...:...|..||
plant   518 YPLIESGHRICSLDSGNKHNNSHVDTVKSLPFLSSSQ---QVLESNEF-KPIGEAVIKVGAALQA 578

  Fly   589 TGEAIYTDDIPRMDGEVYLAFVLSTKPRAKITKLDASEALALDGVHQFFCYKDLTEHENEV---- 649
            :|||::.||||.:...::.||:.||:|.|||..|...|.:...||.....:||:.:....:    
plant   579 SGEAVFVDDIPTLPDCLHGAFIYSTEPLAKIKSLSFRENVTPTGVFAVLTFKDIPQQGQNIGSKT 643

  Fly   650 ----GPVFHDEHVFAAGEVHCYGQIVGAIAADNKALAQRAARLVKVEYE--ELSPVIVTIEQAIE 708
                ||:|.||      ...|.||.:..:.||.:..|..||:|..|||:  .|...|:|:|.|::
plant   644 LFGPGPLFADE------LTRCAGQRIALVVADTQKHADMAAKLAVVEYDTKNLEQPILTVEDAVK 702

  Fly   709 HKSYFPDYPRFVTK--GNVEEALAQADH-TFEGTCRMGGQEHFYLETHAALAVPRDSDELELFCS 770
            ..|:|..:|.|..:  |:|.:.:.:|:. ......|:|.|..||:|...|||:|.:.:.:::|.|
plant   703 RSSFFEVHPMFYPEPVGDVIKGMEEAERKIISSELRLGSQYFFYMEPQTALALPDEDNCVKVFSS 767

  Fly   771 TQHPSEVQKLVAHVTALPAHRVVCRAKRLGGGFGGKESRGISVALPVALAAYRMGRPVRCMLDRD 835
            :|.|..|..::|....:..|.|....:|:|||||||..:.:.||...||.||::.|||:..|:|.
plant   768 SQAPEYVHSVIATCLGIQEHNVRVITRRVGGGFGGKAVKSMPVATACALGAYKLQRPVKMFLNRK 832

  Fly   836 EDMLITGTRHPFLFKYKVGFTKEGLITACDIECYNNAGWSMDLSFSVLERAMFHFENCYRIPNVR 900
            .||::.|.|||....|.|||..:|.:||.::....:||...|:| .::.|.:        :..:|
plant   833 TDMIMAGGRHPMKINYNVGFRSDGKLTALELTMLIDAGLEPDVS-PIMPRNI--------MGPLR 888

  Fly   901 VGGW--------VCKTNLPSNTAFRGFGGPQGMYAGEHIIRDVARIVGRDVVDVMRLNFYKTGD- 956
            ...|        |||||..|.||.|..|..||.|..|.||.:||..:..||..|.::|.: |.| 
plant   889 KYDWGALSFDVKVCKTNCLSRTAMRAPGEVQGSYIAESIIENVASSLQMDVDAVRKINLH-TYDS 952

  Fly   957 ----YTHYHQQLEHFPIERCLEDCLKQSRYDEKRQEIARFNRENRWRKRGMAVVPTKYGIAFGVM 1017
                |.|.....:.:.:....|.....|::.|:.:.:..||..|.|||||::.||    |...||
plant   953 LRKFYNHIAGDPDEYTLPLLWEKLEISSKFKERSEMVKEFNLCNVWRKRGISRVP----IVHQVM 1013

  Fly  1018 HLNQAGSLINIYGDGSVLLSHGGVEIGQGLNTKMIQCAARALGIPS--------ELIHISETATD 1074
            .....|. ::|..||||::..||:||||||.||:.|..|..||:..        :.|.:.::.|.
plant  1014 QRPTPGK-VSILSDGSVVVEVGGIEIGQGLWTKVQQMVAYGLGMVKCEGNEKLLDRIRVVQSDTL 1077

  Fly  1075 KVPNTSPTAASVGSDLNGMAVLDACEKLNKRLAPIKEAL----PGG-TWKEWINKAYFDRVSLSA 1134
            .:.....||.|..|:.:..||...|..|.:||.||.:.:    .|. ||...|.:||...::|||
plant  1078 GMIQGGFTAGSTTSESSCEAVRLCCVILVERLKPIMDQMMMEKSGSVTWNILIQQAYGQYINLSA 1142

  Fly  1135 TGFYAMPGIGYHPETNPNARTYSYYTNGVGVTVVEIDCLTGDHQVLSTDIVMDIGSSLNPAIDIG 1199
            :..|           .|...:..|...||||:.||:|.:||..::|.:||:.|.|.|||||:|:|
plant  1143 STLY-----------KPEYSSMEYLNYGVGVSEVEVDLVTGKTEILRSDIIYDCGKSLNPAVDLG 1196

  Fly  1200 QIEGAFMQGYGLFTLEELMYSPQGMLYSRGPGMYKLPGFADIPGEFNVSLLTGAPNPRAVYSSKA 1264
            |.||||:||.|.|.:||.....:|::..:|...||:|....||..|||.::....:...|.||||
plant  1197 QTEGAFVQGIGFFMMEEYTTDEKGLVVQQGTWDYKIPTVDTIPKHFNVEIVNTGHHKNRVLSSKA 1261

  Fly  1265 VGEPPLFIGSSAFFAIKEAIAAARED-------QGLSGDFPLEAPSTSARIRIAC 1312
            .|||||.:.:|...|.:.||..||:.       .|...:|.|..|:|...::..|
plant  1262 SGEPPLLLAASVHCATRSAIREARKHSLSSNFIDGSDSEFELPVPATMPVVKSLC 1316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ryNP_524337.1 Fer2 8..78 CDD:278537 31/69 (45%)
PLN02906 25..1317 CDD:215491 440/1401 (31%)
Fer2_2 87..158 CDD:280048 41/75 (55%)
FAD_binding_5 231..411 CDD:279309 52/206 (25%)
CO_deh_flav_C 422..525 CDD:281449 23/123 (19%)
Ald_Xan_dh_C 589..696 CDD:279635 38/116 (33%)
Ald_Xan_dh_C2 716..1242 CDD:280834 187/554 (34%)
AAO3NP_001077966.1 PLN00192 1..1331 CDD:215096 448/1420 (32%)
Fer2_2 84..162 CDD:280048 41/77 (53%)
FAD_binding_5 223..398 CDD:279309 52/209 (25%)
CO_deh_flav_C 412..520 CDD:281449 22/124 (18%)
Ald_Xan_dh_C 579..689 CDD:279635 38/115 (33%)
Ald_Xan_dh_C2 718..1239 CDD:280834 185/546 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4631
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D48717at2759
OrthoFinder 1 1.000 - - FOG0000201
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100184
Panther 1 1.100 - - O PTHR11908
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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