DRSC/TRiP Functional Genomics Resources

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Protein Alignment ry and AOX4

DIOPT Version :9

Sequence 1:NP_524337.1 Gene:ry / 41605 FlyBaseID:FBgn0003308 Length:1335 Species:Drosophila melanogaster
Sequence 2:NP_650478.1 Gene:AOX4 / 41897 FlyBaseID:FBgn0038350 Length:1256 Species:Drosophila melanogaster


Alignment Length:1359 Identity:420/1359 - (30%)
Similarity:633/1359 - (46%) Gaps:187/1359 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FFVNGK----KVTEVSPDPECTLLTFLREKLRLCGTKLGCAEGGCGACTVMVSRLDRRANKIRHL 68
            |.:||:    .:|::.||  .||.||:||..:|..||..|.|||||||...||  |.::.    .
  Fly     5 FTINGQPYAVNLTDLPPD--ITLNTFIREHAQLTATKFMCLEGGCGACVCAVS--DGKST----W 61

  Fly    69 AVNACLTPVCSMHGCA---VTTVEGIGSTKTRLHPVQERLAKAHGSQCGFCTPGIVMSMYALL-R 129
            .||:||.   .::.||   :.|.||:|:..|..||:|:||||.:|:|||||:||.||:||.|: :
  Fly    62 TVNSCLK---LLNTCAQLEIITCEGLGNQVTGYHPIQKRLAKMNGTQCGFCSPGFVMNMYGLMEQ 123

  Fly   130 NAEQPSMRDLEVAFQGNLCRCTGYRPILEGYKTFTKEFACGMGEKC------------CKVSGKG 182
            :..:.:|.::|.:|.||:||||||||||:..|:|..:....:.|:.            |..|||.
  Fly   124 HGGRVTMEEVENSFGGNICRCTGYRPILDAMKSFAVDSTVEVSEESVDIEDLNLKARNCPRSGKV 188

  Fly   183 C-GTDAETDDKLFERSEFQPLDPSQEPIFPPELQLSDAFDSQSLIFSSDRVTWYRPTNLEEL--- 243
            | ||                                   ..||.:...|...||.|:.|.|:   
  Fly   189 CKGT-----------------------------------CRQSKLIYEDGSQWYWPSTLAEIFEA 218

  Fly   244 LQLKAKHPAAKLVVGNTEVGV-----EVKFKHFLYPHLINPTQVKELLEIKENQDGIYFGAAVSL 303
            |:.........||.|||..||     ::|       |.|:...|::|.:...:::.:..||::||
  Fly   219 LENVGDSEEFMLVGGNTAHGVYRRSPDIK-------HFIDVNGVEDLHQYSSDKEKLTLGASLSL 276

  Fly   304 MEIDALLRQRIEQLPESETRLFQCTVDMLHYFAGKQIRNVACLGGNIMTGS-----PISDMNPVL 363
            .|...:::...:|.......:....:|::   |...:||...|.|||.|..     | ||:....
  Fly   277 TETMEIIQSTSKQSGFEYLEVLWHHIDLV---ANVPVRNSGTLAGNICTKKEHPEFP-SDIFISF 337

  Fly   364 SAAGAQLEVASFVDGKLQKRSVHMGTGFFTG--YRRNVIEAHEVLLGIHFRKTTPDQYIV-AFKQ 425
            .|...::.....:|.:.:     |....|.|  .|:.:::|      ....:...|.||. :||.
  Fly   338 EALDVKVVAMKGIDDEKE-----MTLEEFLGDTDRKMLLKA------FILPRYPKDMYIYDSFKI 391

  Fly   426 ARRRDDDIAIVNAAINVRFEEKSNIVAEISMAFGGMAPTTVLAPRTSQLMVGQE-WSHQLVERVA 489
            ..|..:..|.|||...:..:..| :|....:.|||:.|..:.|....|||||.. :...|||:..
  Fly   392 MPRAQNAHAYVNAGFLLELDGNS-MVKSARICFGGIRPDFIHATDIEQLMVGHSPYESNLVEQTF 455

  Fly   490 ESLCTELPLAASAPGGMIAYRRALVVSLFFKAYLAISLKLSKSGITSSDALPSEERSGAETFHTP 554
            ..|.:.:......|....|||..|...|.:|..|..:.....||         :.:||.|....|
  Fly   456 NKLESLVKPDEVLPDASPAYRSKLACGLLYKFLLKHAPDAEVSG---------KFKSGGELLQRP 511

  Fly   555 VLKSAQLFERVCSDQPICDPIGRPKVHAAALKQATGEAIYTDDIPRMDGEVYLAFVLSTKPRAKI 619
            :....|||:......|:...:.:    ...:.|.:|||.|.:|:......||.|||.:||..|.|
  Fly   512 LSSGLQLFQTNKQTYPVTQGVQK----LEGMIQCSGEATYMNDVLTTSNSVYCAFVGATKVGATI 572

  Fly   620 TKLDASEALALDGVHQFFCYKDLTEHENEVGPVF--HDEHVFAAGEVHCYGQIVGAIAADNKALA 682
            .::||:|||...||..|:..||:........|.|  ..|.:|.:|.|....|.||.|.|.....|
  Fly   573 DQIDATEALQHPGVVAFYTAKDIPGTNTFCEPSFGYEAEEIFCSGMVRHSEQPVGVIVALTADQA 637

  Fly   683 QRAARLVKVEYE------ELSPVIVTIEQAIEHKSYFPD----YPRFVTKGNVEEALAQADHTFE 737
            |||.:|||:.|.      :|.|.:..:     ..|..||    .|..::|....:...:.|....
  Fly   638 QRATKLVKISYSSPSSNFKLMPSLKDV-----FSSETPDTSRIIPLVISKLKEVKFSDKPDLEVR 697

  Fly   738 GTCRMGGQEHFYLETHAALAVPRDSDELELFCSTQHPSEVQKLVAHVTALPAHRVVCRAKRLGGG 802
            |...||.|.||.:|....:.:|.: |.|::|.:||...:.|.::||...:.|..|....:|||||
  Fly   698 GIFEMGLQYHFTMEPQTTIIIPFE-DGLKVFSATQWIDQTQSVIAHTLQMKAKDVQLEVRRLGGG 761

  Fly   803 FGGKESRGISVALPVALAAYRMGRPVRCMLDRDEDMLITGTRHPFLFKYKVGFTKEGLITACDIE 867
            :|.|.|||..||...||||:::.||||.:...:..|...|.|.....:|:......|.|.....:
  Fly   762 YGCKISRGNQVACAAALAAHKLNRPVRFVQSLESMMDCNGKRWACRSEYQCHVKTSGRIVGLSND 826

  Fly   868 CYNNAGWSMDLSFSVLERAMFHFENCYRI--PNVRVGGWVCKTNLPSNTAFRGFGGPQGMYAGEH 930
            .|.:|||:.:.| .|...:.|...|||..  .|.::.|....|:.||:|..|..|..:|:...|:
  Fly   827 FYEDAGWNTNES-PVQGHSTFTAANCYEFTDSNFKLSGHAVLTDAPSSTWCRAPGSVEGIAMMEN 890

  Fly   931 IIRDVARIVGRDVVDVMRLNFYKTGDYTHYHQQLEHFPIERCLEDCLKQSRYDEKRQEIARFNRE 995
            ||..||..:.:|..:|...|..|..      :....||      :.||...|..:::||..||..
  Fly   891 IIEHVAFEIQKDPAEVRLANISKKS------KMATVFP------EFLKTREYYSRKKEIEAFNAN 943

  Fly   996 NRWRKRGMAVVPTKYGIA---FGVMHLNQAGSLINIYG-DGSVLLSHGGVEIGQGLNTKMIQCAA 1056
            |||:|||:       |::   |.::::.|..:.:.||. ||:|:::|||:|:|||:|||:.|.||
  Fly   944 NRWKKRGL-------GLSLMNFPIIYIGQFPATVTIYHVDGTVVVTHGGIEMGQGMNTKIAQVAA 1001

  Fly  1057 RALGIPSELIHISETATDKVPNTSPTAASVGSDLNGMAVLDACEKLNKRLAPIKEALPGGTWKEW 1121
            ..|||....:.:..:.:....|:..|..::||:....||...||.||.||.|:::|  ..||.|.
  Fly  1002 YTLGIDLSYVKVESSTSINGANSMVTGYAIGSESVCYAVRKICETLNARLKPVRKA--KATWVET 1064

  Fly  1122 INKAYFDRVSLSATGFYAMPGIGYHPETNPNARTYSYYTNGVGVTVVEIDCLTGDHQVLSTDIVM 1186
            :..|....::|.|:..|            ......:|:..|:.::.||||.|||:..:...||:.
  Fly  1065 VEAANAQLINLIASDHY------------KTGDMQNYHVLGLALSEVEIDVLTGNILIRRVDILE 1117

  Fly  1187 DIGSSLNPAIDIGQIEGAFMQGYGLFTLEELMY-SPQGMLYSRGPGMYKLPGFADIPGEFNVSLL 1250
            |.|.||:|.||:||:||||:.|.|.:..|.|:| ...|.|.:.....||..|..|||.:|.|.|:
  Fly  1118 DAGESLSPWIDVGQVEGAFVMGLGYWLSELLIYEGDNGRLLTNRTWNYKPLGAKDIPIDFRVELV 1182

  Fly  1251 TGAPNPRAVYS----SKAVGEPPLFIGSSAFFAIKEAIAAAREDQGLSGDF-PLEAPST 1304
               .|||...|    |||.||||..:..|..||:::|:.:||:|.||..:: .|.||:|
  Fly  1183 ---HNPRPSSSGFMGSKATGEPPCCLAVSVIFALQQALQSARQDAGLPREWLRLGAPTT 1238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ryNP_524337.1 Fer2 8..78 CDD:278537 30/73 (41%)
PLN02906 25..1317 CDD:215491 414/1338 (31%)
Fer2_2 87..158 CDD:280048 39/71 (55%)
FAD_binding_5 231..411 CDD:279309 43/194 (22%)
CO_deh_flav_C 422..525 CDD:281449 31/103 (30%)
Ald_Xan_dh_C 589..696 CDD:279635 43/114 (38%)
Ald_Xan_dh_C2 716..1242 CDD:280834 170/532 (32%)
AOX4NP_650478.1 PLN02906 24..1240 CDD:215491 414/1338 (31%)
Fer2_2 80..153 CDD:280048 40/72 (56%)
FAD_binding_5 203..378 CDD:279309 43/196 (22%)
CO_deh_flav_C 388..489 CDD:281449 30/101 (30%)
Ald_Xan_dh_C 542..648 CDD:214971 42/105 (40%)
Ald_Xan_dh_C2 690..1174 CDD:280834 168/518 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459128
Domainoid 1 1.000 150 1.000 Domainoid score I192
eggNOG 1 0.900 - - E1_COG4631
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 195 1.000 Inparanoid score I167
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D19024at33392
OrthoFinder 1 1.000 - - FOG0000201
OrthoInspector 1 1.000 - - mtm9740
orthoMCL 1 0.900 - - OOG6_100184
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.700

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