DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ry and AOX3

DIOPT Version :9

Sequence 1:NP_524337.1 Gene:ry / 41605 FlyBaseID:FBgn0003308 Length:1335 Species:Drosophila melanogaster
Sequence 2:NP_001303439.1 Gene:AOX3 / 41896 FlyBaseID:FBgn0038349 Length:1254 Species:Drosophila melanogaster


Alignment Length:1354 Identity:425/1354 - (31%)
Similarity:632/1354 - (46%) Gaps:179/1354 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FFVNG----KKVTEVSPDPECTLLTFLREKLRLCGTKLGCAEGGCGACTVMVSRLDRRANKIRHL 68
            |.:||    ..:|.:.||  .||.||:||..:|..||..|.|||||||..:|     |..| |..
  Fly     5 FSINGLPYAVNLTNLPPD--ITLNTFIREHAQLTATKFMCQEGGCGACICVV-----RDGK-RSW 61

  Fly    69 AVNACLTPVCSMHGCA---VTTVEGIGSTKTRLHPVQERLAKAHGSQCGFCTPGIVMSMYALL-R 129
            |||:|||   .::.||   :.|.||:|:.:|..:|:|:||||.:|:|||||:||.||:||.|: :
  Fly    62 AVNSCLT---LLNTCAQLEIVTAEGLGNQRTGYNPIQKRLAKMNGTQCGFCSPGFVMNMYGLMEQ 123

  Fly   130 NAEQPSMRDLEVAFQGNLCRCTGYRPILEGYKTFTKEFACGMGEKC----------CKVSGKGCG 184
            |..:.:|.::|.:|.||:||||||||||:..|:|..:....:..:|          |..:|:.|.
  Fly   124 NEGKVTMAEVENSFGGNICRCTGYRPILDAMKSFAVDSNIAIPAECGDIEDLKPRNCPKTGQACS 188

  Fly   185 TDAETDDKLFERSEFQPLDPSQEPIFPPELQLSDAFDSQSLIFSSDRVTWYRPTNLEELLQLKAK 249
            ........::|                                  |.|.|:.|.:|.||.....|
  Fly   189 GSCLPSTLVYE----------------------------------DGVQWHWPKSLSELFDALDK 219

  Fly   250 HPAAK---LVVGNTEVGV---EVKFKHFLYPHLINPTQVKELLEIKENQDGIYFGAAVSLMEIDA 308
            ...::   ||.|||..||   ....|||     |:...|:||.:.......:..||.:||.:...
  Fly   220 VKDSEEFMLVAGNTAHGVYRRSTDIKHF-----IDVQGVEELHQHSSEGQQLKLGANLSLTQTME 279

  Fly   309 LLRQRIEQLPESETRLFQCTVDMLHYFAGKQIRNVACLGGNIMTGSPISDMNP------VLSAAG 367
            ::|...:|.......:....:|::   |...:||...|.|||    .|...||      .:|...
  Fly   280 IIRTTSKQPGFEYLDVLWNHIDLI---ANVPVRNSGTLAGNI----SIKKQNPEFPSDIFISFEA 337

  Fly   368 AQLEVASF---VDGKLQKRSVHMGTGFFTGYRRNVIEAHEVLLGIHFRKTTPDQYIV-AFKQARR 428
            ..::|.:.   .|.|....:.::||.          :...||..........|:||. ::|...|
  Fly   338 LNVKVVALKNAADEKEMSLAEYLGTN----------DKKLVLKTFVLPAYPKDKYIYESYKIMPR 392

  Fly   429 RDDDIAIVNAAINVRFEEKSNIVAEISMAFGGMAPTTVLAPRTSQLMVGQE-WSHQLVERVAESL 492
            ..:..|.||||..:.. |..|.|....:.|||:.|..:.|....:|:|||. :...|||:....|
  Fly   393 AQNAHAYVNAAFLLEL-EADNKVKSARICFGGIRPDFIHASAIEKLLVGQNPYESSLVEQTFTKL 456

  Fly   493 CTELPLAASAPGGMIAYRRALVVSLFFKAYLAISLKLSKSGITSSDALPSEERSGAETFHTPVLK 557
            ...:......|....|||..|...||:| :|.....:::.|        .:.|||.:....|:..
  Fly   457 EDLIKPDEVLPDASPAYRSKLACGLFYK-FLLKHAPVAEVG--------EKFRSGGQILQRPLSS 512

  Fly   558 SAQLFERVCSDQPICDPIGRPKVHAAALKQATGEAIYTDDIPRMDGEVYLAFVLSTKPRAKITKL 622
            ..|:|:....:.|:...:.:    ...:.|.:|||.|.:|:......::.|||.:||..:.|..:
  Fly   513 GLQVFQTQKKNYPVTQAVEK----VEGMIQCSGEATYMNDVLTTSNTLHCAFVGATKVGSTIDSI 573

  Fly   623 DASEALALDGVHQFFCYKDL----TEHENEVGPVFHDEHVFAAGEVHCYGQIVGAIAADNKALAQ 683
            ||||||...||..|:..||:    |..|...|  |..|.:|.:|.|....|..|.|.|.....|.
  Fly   574 DASEALKQPGVIAFYSAKDIPGTNTFCEPSFG--FEVEEIFCSGLVRHSEQPAGVIVALTADQAH 636

  Fly   684 RAARLVKVEYE------ELSPVIVTIEQAIEHKSYFPDYPRFV-----TKGNVEEALAQADHTFE 737
            |||:||::.|.      :|.|.:..:     ..|..||..|.|     |...::.: .|.|....
  Fly   637 RAAKLVRISYSNPSSDFKLQPSLGDV-----FASPTPDSSRIVPASKSTSKKIKFS-EQPDKEVR 695

  Fly   738 GTCRMGGQEHFYLETHAALAVPRDSDELELFCSTQHPSEVQKLVAHVTALPAHRVVCRAKRLGGG 802
            |..:||.|.||.:|....:|:|.: |.|::|.:||...:.|.::||:..:.|..|..:.:|||||
  Fly   696 GIFQMGLQYHFTMEPQTTVAIPFE-DGLKIFSATQWMDQTQSVIAHMLQVKAKDVQLQVRRLGGG 759

  Fly   803 FGGKESRGISVALPVALAAYRMGRPVRCMLDRDEDMLITGTRHPFLFKYKVGFTKEGLITACDIE 867
            :|.|.:||..||...:|.||::.||||.:...:..|...|.|......||......|.|.....:
  Fly   760 YGSKITRGNQVACAASLVAYKLNRPVRFVQSLESMMDCNGKRWACRSDYKCHIKDNGKIVGLTND 824

  Fly   868 CYNNAGWSMDLSFSVLERAMFHFENCYRI--PNVRVGGWVCKTNLPSNTAFRGFGGPQGMYAGEH 930
            .|.:||||.:.| .:...:.|...|||.:  .|.:..|....|:.||:|..|..|..:|:...|:
  Fly   825 FYEDAGWSPNES-PIEGHSTFTAVNCYDLNGDNFKNNGNAVLTDAPSSTWCRAPGSVEGIAMIEN 888

  Fly   931 IIRDVARIVGRDVVDVMRLNFYKTGDYTHYHQQLEHFPIERCLEDCLKQSRYDEKRQEIARFNRE 995
            ||..||..|.:|..:| ||.....|:           .|...|...|:...|.::::||...|.:
  Fly   889 IIEHVAFEVQKDPAEV-RLANIAAGN-----------KISELLPQFLESREYAQRKKEIESHNAK 941

  Fly   996 NRWRKRGMAVVPTKYGIAFGVMHLNQAGSLINIYG-DGSVLLSHGGVEIGQGLNTKMIQCAARAL 1059
            |||.|||:.:....|.|    .:..|..:.:.||. ||:|:::|||:|:|||:|||:.|.||..|
  Fly   942 NRWTKRGLGLAVMDYPI----FYFGQYPATVAIYHVDGTVVVTHGGIEMGQGMNTKVAQVAAYTL 1002

  Fly  1060 GIPSELIHISETATDKVPNTSPTAASVGSDLNGMAVLDACEKLNKRLAPIKEALPGGTWKEWINK 1124
            ||....|.:..:.|....|:..|..:|||:....||..|||.||.||.|:|:  ...:|.|.:..
  Fly  1003 GIDLSFIKVESSDTINGANSMVTGGAVGSESLCYAVRKACETLNSRLEPVKK--KDASWIETVEA 1065

  Fly  1125 AYFDRVSLSATGFYAMPGIGYHPETNPNARTYSYYTNGVGVTVVEIDCLTGDHQVLSTDIVMDIG 1189
            ||...::|.|:..|            ......:|:..|:.:|.||:|.|||:.|:...||:.|.|
  Fly  1066 AYGKSINLIASDHY------------KKGDMQNYHIYGLALTEVELDVLTGNSQIKRVDILEDAG 1118

  Fly  1190 SSLNPAIDIGQIEGAFMQGYGLFTLEELMYSPQ-GMLYSRGPGMYKLPGFADIPGEFNVSLLTGA 1253
            .||:|.||||||||||:...|.:..|:|:|..: |.|.:.....||.||..|||.:|.:.|:. .
  Fly  1119 ESLSPWIDIGQIEGAFVMCLGYWMSEQLVYDRETGRLLTNRTWNYKPPGAKDIPIDFRIELIQ-K 1182

  Fly  1254 PNPRAV--YSSKAVGEPPLFIGSSAFFAIKEAIAAAREDQGLSGDF-PLEAPST 1304
            |||...  ..|||.||||..:..|..||:::|:.:||.|.||..:: .|.||:|
  Fly  1183 PNPSGAGFMRSKATGEPPCCLAVSVVFALRQALDSARHDAGLPREWVRLGAPTT 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ryNP_524337.1 Fer2 8..78 CDD:278537 33/73 (45%)
PLN02906 25..1317 CDD:215491 419/1333 (31%)
Fer2_2 87..158 CDD:280048 39/71 (55%)
FAD_binding_5 231..411 CDD:279309 46/194 (24%)
CO_deh_flav_C 422..525 CDD:281449 32/103 (31%)
Ald_Xan_dh_C 589..696 CDD:279635 41/116 (35%)
Ald_Xan_dh_C2 716..1242 CDD:280834 179/534 (34%)
AOX3NP_001303439.1 PLN02906 24..1238 CDD:215491 419/1333 (31%)
Fer2_2 80..153 CDD:280048 40/72 (56%)
FAD_binding_4 201..360 CDD:303082 42/170 (25%)
CO_deh_flav_C 386..487 CDD:281449 31/102 (30%)
Ald_Xan_dh_C 540..646 CDD:214971 40/107 (37%)
Ald_Xan_dh_C2 688..1172 CDD:280834 176/515 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459127
Domainoid 1 1.000 150 1.000 Domainoid score I192
eggNOG 1 0.900 - - E1_COG4631
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 195 1.000 Inparanoid score I167
Isobase 1 0.950 - 0 Normalized mean entropy S3132
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D19024at33392
OrthoFinder 1 1.000 - - FOG0000201
OrthoInspector 1 1.000 - - mtm9740
orthoMCL 1 0.900 - - OOG6_100184
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
109.650

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