DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ry and AOX1

DIOPT Version :9

Sequence 1:NP_524337.1 Gene:ry / 41605 FlyBaseID:FBgn0003308 Length:1335 Species:Drosophila melanogaster
Sequence 2:NP_650475.1 Gene:AOX1 / 41894 FlyBaseID:FBgn0267408 Length:1273 Species:Drosophila melanogaster


Alignment Length:1340 Identity:430/1340 - (32%)
Similarity:653/1340 - (48%) Gaps:164/1340 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ECTLLTFLREKLRLCGTKLGCAEGGCGACTVMVSRLDRRANKIRHLAVNACLTPVCSMHGCAVTT 87
            :.:|.||:||...|.|||..|.|||||.|...::.:.....::|..|||:|||.:.:..|..|||
  Fly    22 DISLNTFIREYAGLTGTKFMCQEGGCGVCVCTLTGIHPETGELRTWAVNSCLTLLNTCLGLEVTT 86

  Fly    88 VEGIGSTKTRLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRN-AEQPSMRDLEVAFQGNLCRCT 151
            .||:|:.:...|.:|:||||.:|:|||:|:|||||:||.||:: ..:.:|.::|.:|.||:||||
  Fly    87 SEGLGNKRVGYHAIQQRLAKMNGTQCGYCSPGIVMNMYGLLKSKGGKVTMEEVENSFGGNICRCT 151

  Fly   152 GYRPILEGYKTFTKEFACGMGEKCCKV---SGKGCGTDAETDDKLFERSEFQPLDPSQEPIFPPE 213
            ||||||:..|:|..:....:..:|..:   |.|.|....:|.....::.:     |....::|  
  Fly   152 GYRPILDAMKSFAVDSNIQVPAECIDIEDLSTKKCPKTGQTCSGSCKKQQ-----PKGSQLYP-- 209

  Fly   214 LQLSDAFDSQSLIFSSDRVTWYRPTNLEEL---LQ--LKAKHPAAKLVVGNTEVGV---EVKFKH 270
                            |...|..|.:|.:|   ||  :|.|.| ..||.|||..||   ....|.
  Fly   210 ----------------DGSRWSWPVSLGDLFAALQGAVKEKLP-YMLVAGNTAHGVYRRSPDIKA 257

  Fly   271 FLYPHLINPTQVKELLEIK-----ENQDGIYFGAAVSLMEIDALLRQRIEQLPESETRLFQCTVD 330
            |:        .|..|.|:|     .:...:..|..:||.|...|.||.      ..|:.|:....
  Fly   258 FI--------DVSGLAELKGHKLSADNSSLTLGGNLSLSETMELCRQL------ENTKGFEYLSQ 308

  Fly   331 M---LHYFAGKQIRNVACLGGN--IMTGSP--ISDMNPVLSAAGAQLEVASFVDGKLQKRSVHMG 388
            :   |.:.|...:||...|.||  |....|  .||:..||.|..||:.|...||   ::::|.:.
  Fly   309 VWQHLDWIANVPVRNAGTLAGNLSIKHAHPEFPSDVFIVLEALDAQVIVQEAVD---KQQTVSLA 370

  Fly   389 TGFFTGYRRNVIEAHEVLLGIHFRKTTPDQYIV-AFKQARRRDDDIAIVNAAINVRFEEKSNIVA 452
            :     |..:.:|. :::.|:..|....:::.. ::|...|..:..|.||||..|.|...:. |.
  Fly   371 S-----YLGSSMEG-KIIRGLVLRAYPKERFAFDSYKIMPRAQNAHAYVNAAFLVEFTADAK-VK 428

  Fly   453 EISMAFGGMAPTTVLAPRTSQLMVGQE-WSHQLVERVAESLCTELPLAASAPGGMIAYRRALVVS 516
            ...:.|||:.|..|.|.....|:..:. :.:.|||:....|.|.|...|..|.....|||.|...
  Fly   429 SARICFGGIHPEFVHATAIENLIRDKNPFENGLVEKAFGQLSTLLQPDAVLPDASPVYRRKLACG 493

  Fly   517 LFFKAYLAISLK----LSKSGITSSDALPSEERSGAETF-----HTPVLKSAQLFERVCSDQPIC 572
            ||:|..|.|:.:    |....:|....|.....||.::|     |.||.|:.:..|         
  Fly   494 LFYKFLLKIAAQRKQGLGSRFVTGGSLLKRPVSSGQQSFETFQEHYPVTKATEKHE--------- 549

  Fly   573 DPIGRPKVHAAALKQATGEAIYTDDIPRMDGEVYLAFVLSTKPRAKITKLDASEALALDGVHQFF 637
                       .|.|.:|||.|::|:|....:::.|||::.|..||:||:|...||.|.||..:.
  Fly   550 -----------GLIQCSGEATYSNDLPTQHNQLWAAFVIAKKVGAKVTKVDTQPALDLPGVVAYL 603

  Fly   638 CYKDLTEHENEVGPVFH-------DEHVFAAGEVHCYGQIVGAIAADNKALAQRAARLVKVEY-- 693
            ..||: ...|.|||...       ||.:||.||:..|||.||.|.|::.:||.|||.|||:.|  
  Fly   604 DAKDI-PGPNYVGPKIRDQFFFPKDEELFATGEIKFYGQPVGIILANSNSLANRAAELVKLTYEG 667

  Fly   694 --EELSPVIVTI-----EQAIEHKSYFPDYPRFVTKGNVEEALAQADHTFEGTCRMGGQEHFYLE 751
              ||:.|.:..:     .:|..:|.........:....:||..   |.:..|...||.|.|:|:|
  Fly   668 GAEEILPSLKAVLDKVGSEAGNNKRLEQPIKSTIDVLQLEEPF---DVSSSGQLDMGLQYHYYME 729

  Fly   752 THAALAVPRDSDELELFCSTQHPSEVQKLVAHVTALPAHRVVCRAKRLGGGFGGKESRGISVALP 816
            ....:.:|.:.. |:::.:||.....|..:|:|..|.::.|..:.:|:|||:|||.:|....|..
  Fly   730 PQTTVVLPFEGG-LQVYAATQWMDLTQDTIANVLNLKSNDVQVKTRRIGGGYGGKATRCNLAAAA 793

  Fly   817 VALAAYRMGRPVRCMLDRDEDMLITGTRHPFLFKYKVGFTKEGLITACDIECYNNAGWSMDLSFS 881
            .||||:::.||:|.:...:..|...|.|..|...|.....|.|.|:......|.:||:.  .:.|
  Fly   794 AALAAHKLNRPIRFVQSLESIMTSLGKRWAFHCDYDFFVQKSGKISGIVSRFYEDAGYL--ANES 856

  Fly   882 VLERAMFHFENCYRI-PNVRVGGWVCKTNLPSNTAFRGFGGPQGMYAGEHIIRDVARIVGRDVVD 945
            .:...:...:|||.. .|.::.|::..|:.||||..|..|..:|:...|:||..:|...|.|..|
  Fly   857 PIGHTVLLSKNCYEFSDNYKLDGYLVCTDSPSNTPCRAPGSVEGIAMMENIIEHIAFETGVDPAD 921

  Fly   946 VMRLNF---YKTGDYTHYHQQLEHFPIERCLEDCLKQSRYDEKRQEIARFNRENRWRKRGMAVVP 1007
            |...|.   :|.||      .:..|         |:.::|.|::.|....|:||||.|||:.:..
  Fly   922 VRFANLLPAHKMGD------MMPRF---------LESTKYRERKAEAIAHNKENRWHKRGLGLCI 971

  Fly  1008 TKYGIAFGVMHLNQAGSLINIY-GDGSVLLSHGGVEIGQGLNTKMIQCAARALGIPSELIHISET 1071
            .:|.|.:    ..|..:.:.|| .||:|::||||:|:|||:|||:.|.||..||||.|.:.|..:
  Fly   972 MEYQIGY----FGQYPATVAIYHSDGTVVVSHGGIEMGQGMNTKISQVAAHTLGIPMEQVRIEAS 1032

  Fly  1072 ATDKVPNTSPTAASVGSDLNGMAVLDACEKLNKRLAPIKEALPGGTWKEWINKAYFDRVSLSATG 1136
            .|....|:..|..:|||:....||..|||.||:||.|::|.:....|::.|.:||..:::|.|:.
  Fly  1033 DTINGANSMVTGGAVGSETLCFAVRKACETLNERLKPVREEVKPENWQDLIQEAYNRKINLIASD 1097

  Fly  1137 FYAMPGIGYHPETNPNARTYSYYTNGVGVTVVEIDCLTGDHQVLSTDIVMDIGSSLNPAIDIGQI 1201
             ....|     :.:|      |...|:.:|.||:|.|||::.|...||:.|.|.||||.:|||||
  Fly  1098 -QCKQG-----DMDP------YSVCGLCLTEVELDVLTGNYIVGRVDILEDTGESLNPNVDIGQI 1150

  Fly  1202 EGAFMQGYGLFTLEELMYSPQ-GMLYSRGPGMYKLPGFADIPGEFNVSLLTGAPNPRAVYSSKAV 1265
            |||||.|.|.:|.|:::..|: |...:.....||.||..|||.:..:.||..:||......|||.
  Fly  1151 EGAFMMGLGYWTSEQVIADPKTGECLTNRTWTYKPPGAKDIPTDLRIELLPKSPNKAGFMRSKAT 1215

  Fly  1266 GEPPLFIGSSAFFAIKEAIAAAREDQGLSGDF-PLEAPST 1304
            |||.:.:..:..||:::|:.:||:|.|:...: .|.||.|
  Fly  1216 GEPAICLSIAVAFALQQALQSARDDAGVPKSWVTLTAPMT 1255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ryNP_524337.1 Fer2 8..78 CDD:278537 23/54 (43%)
PLN02906 25..1317 CDD:215491 430/1338 (32%)
Fer2_2 87..158 CDD:280048 38/71 (54%)
FAD_binding_5 231..411 CDD:279309 54/199 (27%)
CO_deh_flav_C 422..525 CDD:281449 33/103 (32%)
Ald_Xan_dh_C 589..696 CDD:279635 49/117 (42%)
Ald_Xan_dh_C2 716..1242 CDD:280834 177/531 (33%)
AOX1NP_650475.1 fer2 4..85 CDD:238126 24/62 (39%)
PLN02906 28..1259 CDD:215491 428/1334 (32%)
Fer2_2 86..159 CDD:280048 39/72 (54%)
FAD_binding_4 211..373 CDD:303082 51/184 (28%)
CO_deh_flav_C 399..502 CDD:281449 33/103 (32%)
Ald_Xan_dh_C 555..666 CDD:214971 47/111 (42%)
Ald_Xan_dh_C2 711..1192 CDD:280834 175/514 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459130
Domainoid 1 1.000 150 1.000 Domainoid score I192
eggNOG 1 0.900 - - E1_COG4631
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 195 1.000 Inparanoid score I167
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D19024at33392
OrthoFinder 1 1.000 - - FOG0000201
OrthoInspector 1 1.000 - - mtm9740
orthoMCL 1 0.900 - - OOG6_100184
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.700

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