DRSC/TRiP Functional Genomics Resources

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Protein Alignment yellow-f2 and smp-30

DIOPT Version :9

Sequence 1:NP_650247.1 Gene:yellow-f2 / 41596 FlyBaseID:FBgn0038105 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001262580.1 Gene:smp-30 / 41786 FlyBaseID:FBgn0038257 Length:306 Species:Drosophila melanogaster


Alignment Length:310 Identity:60/310 - (19%)
Similarity:101/310 - (32%) Gaps:114/310 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 TLNYIDLAEDGSNRSPKLRAYPNFALNQFNASAENLVSVYRTSVDACQRLWFIDTGMLEYPNNRQ 191
            :|.|:||...|.||.       :|..|:          |||..::......||    |...|   
  Fly    30 SLYYVDLESAGINRY-------DFKQNK----------VYRAKIEGEIFASFI----LPVEN--- 70

  Fly   192 QIRRPSIWVVDLATDQVLKRFDVPESIAETGRGLASITVDVKAGQCGDAYAYIPDLVYRRLYVYH 256
               :|..:.|......|:.::|...::|:..|.|..:..|:|..:..||                
  Fly    71 ---KPQEFAVGCGLRTVIVQWDGVSAVAKVTRTLFEVQPDLKENRLNDA---------------- 116

  Fly   257 LRNDRIWSFEHNYFNFDP----LSGDLSIGGQTF-RWDDGIFSITLGAQKLDGSRDAYFHPMAST 316
                          ..||    ..|.::..|..| :|...::|...|.|           |.|..
  Fly   117 --------------KTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGGQ-----------PNAIR 156

  Fly   317 NEFVVSNRVLQQESNAAR--SDHGNDFRVLGSRGPSTQSTMHAYDPGTGV-----IFFDEIQRNG 374
            ::..:||. |..:..|.:  ....|:..||.          :.|:..||.     :.||      
  Fly   157 SKVGISNG-LAWDVKAKKFYFIDTNNHEVLA----------YDYNQSTGAVSNPKVIFD------ 204

  Fly   375 VGCWKTSKPISAENYGSVDSNAEDMIYPSDLSIDEDGTIWVMS-NSMPIF 423
               .:..:|             |..::|..:::|.||.|:|.: |...:|
  Fly   205 ---LRKIRP-------------EGPLFPDGMTVDTDGNIYVATFNGGTVF 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yellow-f2NP_650247.1 MRJP 163..451 CDD:281074 51/274 (19%)
smp-30NP_001262580.1 SGL 18..277 CDD:285626 60/310 (19%)
NHL 168..>248 CDD:302697 19/103 (18%)
NHL repeat 168..208 CDD:271320 9/58 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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