DRSC/TRiP Functional Genomics Resources

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Protein Alignment yellow-f and Rgn

DIOPT Version :9

Sequence 1:NP_524335.1 Gene:yellow-f / 41595 FlyBaseID:FBgn0041710 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_113734.1 Gene:Rgn / 25106 RGDID:3560 Length:299 Species:Rattus norvegicus


Alignment Length:187 Identity:38/187 - (20%)
Similarity:59/187 - (31%) Gaps:69/187 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 RWD----------------------DGIFSATLG------SYKPDGSRDVFFHPMASTNEFVVSN 300
            |||                      .|.:.||:|      :::   .:.||.  :|..:|...:|
  Rat    41 RWDSISNRVQRVGVDAPVSSVALRQSGGYVATIGTKFCALNWE---DQSVFI--LAMVDEDKKNN 100

  Fly   301 RVLQQEFNAARSDHGDDFHLLGTRGPST--------QSTMHKYDPRTGV-IFFAEVQKSGVGCWK 356
            |     ||..:.|....: ..||....|        |.:::...|...| .:|.:|..|....|.
  Rat   101 R-----FNDGKVDPAGRY-FAGTMAEETAPAVLERHQGSLYSLFPDHSVKKYFDQVDISNGLDWS 159

  Fly   357 --------------TSKPFSTE-------NHGSVYSNSSEMIYPSDLTIDEEGYIWV 392
                          |...|..:       |..:||....:...|..:.||.||.:||
  Rat   160 LDHKIFYYIDSLSYTVDAFDYDLPTGQISNRRTVYKMEKDEQIPDGMCIDVEGKLWV 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yellow-fNP_524335.1 MRJP 140..428 CDD:281074 38/187 (20%)
RgnNP_113734.1 SGL 16..264 CDD:285626 38/187 (20%)
NHL 166..>237 CDD:302697 12/51 (24%)
WD40 repeat 203..239 CDD:293791 7/14 (50%)
NHL repeat 203..237 CDD:271320 7/14 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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