DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7381 and Scarf2

DIOPT Version :9

Sequence 1:NP_650242.1 Gene:CG7381 / 41589 FlyBaseID:FBgn0038098 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_038944006.1 Gene:Scarf2 / 287949 RGDID:1306013 Length:838 Species:Rattus norvegicus


Alignment Length:448 Identity:97/448 - (21%)
Similarity:135/448 - (30%) Gaps:155/448 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   368 KKYGSSCTDNGKTCSGLPHSICSKN-------ICLCRQGYYARN--GKCFAEL------------ 411
            ::.|..|  ....|.|  :|.||:|       .|.||.||:..|  .||..:.            
  Rat    61 RQLGDEC--GIAVCEG--NSTCSENEVCVRPGECRCRHGYFGANCDTKCPRQFWGPDCKERCSCH 121

  Fly   412 --GEIAESTDECEYEF----DQLTKTCNCQKNYFYERDLRNCR-KPIQYHLSCTS------NSQC 463
              |:..:.|.:|....    .:....|.||....:.|. ..|| :|..:...|.|      .|:|
  Rat   122 PHGQCEDVTGQCTCHARRWGARCEHACQCQHGTCHPRS-GACRCEPGWWGAQCASACYCSATSRC 185

  Fly   464 SP-FGASYCHP-----EIPRRCTCEEYALYDAIKQLCEYKRG--------LGAECESNDGC---- 510
            .| .||..||.     ....:|:|.        ...||.:.|        .||.|:....|    
  Rat   186 DPQTGACLCHAGWWGRSCNNQCSCN--------SSPCEQQSGRCQCRERTFGARCDRYCQCFRGR 242

  Fly   511 --PVDHSVCSNRVCVCADNYFEK--DDQCMRGI-GADCS--------------VEDDCIP----- 551
              |||.:      |.|...|..|  .:.|..|. |..|.              ||..|:.     
  Rat   243 CHPVDGT------CACDPGYRGKYCREPCPAGFYGLGCRRRCGQCKGQQPCTVVEGRCLTCEPGW 301

  Fly   552 ENTECQEK------DEEDQSRTCQCRKGYV--HFKDECLK-EAEELEDEC-------VEDEQCKP 600
            ..|:|.:.      .|....|...||.|:.  |...:|.. .|..:.|.|       ...|.|..
  Rat   302 NGTKCDQPCATGFYGEGCGHRCPPCRDGHACNHVTGKCTHCNAGWIGDRCETKCSNGTYGEDCAF 366

  Fly   601 LLASCNS------EGKCGCNDEQHAK--NGVCETKRELGESCTKATECYVEK-DPENVEC----- 651
            :.:.|.|      .|:|.|:...|..  |..|..... |..|.:|..|:.|. ||....|     
  Rat   367 VCSDCGSGHCDFQSGRCLCSPGVHGPHCNVTCPAGLH-GVDCAQACSCHEESCDPVTGACHLETN 430

  Fly   652 -RNSV---------------------CQCKLGYSANANQNQCIRVMPNKKNSSGRPSA 687
             |..|                     |.|:       .::...|..|.::.:.||..|
  Rat   431 QRKGVMGAGALLTLLLGLLLSLLGCCCACR-------GKDSARRPRPRRELTLGRKKA 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7381NP_650242.1 EB 68..112 CDD:279949
EB 101..155 CDD:279949
EB 570..624 CDD:279949 17/71 (24%)
EB 613..665 CDD:279949 16/81 (20%)
Scarf2XP_038944006.1 exchanger_TraA <74..431 CDD:411343 85/374 (23%)
PHA03247 <683..837 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.