DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grsm and npepl1

DIOPT Version :9

Sequence 1:NP_731749.3 Gene:grsm / 41587 FlyBaseID:FBgn0040493 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001027495.1 Gene:npepl1 / 613087 XenbaseID:XB-GENE-5829494 Length:522 Species:Xenopus tropicalis


Alignment Length:533 Identity:321/533 - (60%)
Similarity:405/533 - (75%) Gaps:28/533 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 VKFNESLGCSDPQTHPVLIIGQLRHLNLLKFSHLESKLSPRVTEETFLNAVACLHPAPTDKVSLY 191
            ::|..|.|.:|||..|:|::|||.:|....::.|:.||.|:||||.:.:|::.|.|.|||...||
 Frog     6 LEFRSSAGDADPQARPLLVLGQLPNLQRAPWAELKGKLFPKVTEEIWQSALSSLSPNPTDNCPLY 70

  Fly   192 LDVATVAALPLKASRHNTASRAHAITRLVKNHVLNVSEESVVLVCERENLFASACAVVRAFPLYS 256
            |:.|||||||.:.||||:.|.||.||||::|.:...:...:::||||..:||||||:.|||||:|
 Frog    71 LNFATVAALPSRVSRHNSPSAAHFITRLIRNSLPGGANRCILMVCERSEVFASACAIARAFPLFS 135

  Fly   257 RKTGNLLASSQPKLNLGCGDGNANSGRNVVNVEFVLINKDGCIESEPLTDDELNCLNETTRAIRM 321
            |::                ..:..:.:..|.|||::..::    :.|:.:..|.||...|..:|:
 Frog   136 RRS----------------SASRRADKKSVVVEFLVTGQN----NGPMEESTLKCLESATEGVRL 180

  Fly   322 TARIVDMPCNEMNVDHFIQEVEDVGRELCITPKVIRGEELLEQGFGGIYGVGKAAAVPPALVVLS 386
            .|||||.||:|||.|||::|::.|.|:|.|||.:||.|||.::||||||||||||..|||||:||
 Frog   181 AARIVDTPCSEMNTDHFVEEIKAVARDLGITPLIIRDEELNQRGFGGIYGVGKAAEHPPALVILS 245

  Fly   387 HEPKGAQETIALVGKGIVYDTGGLSIKAKTGMPGMKRDCGGAAAILGTFYAAVQCGFRDNLHAVF 451
            |.|:||.:|||.|||||||||||||||.||.|||||||||||||:||.|.|||:.||:|||||||
 Frog   246 HAPEGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFKAAVKQGFKDNLHAVF 310

  Fly   452 CLAENSVGPNATRPDDIHTLYSGRTVEINNTDAEGRLVLADGVCYANKDLKANIILDMATLTGAQ 516
            |||||||||.||||||||.||||:|||||||||||||||||||.||.|||.|:||||||||||||
 Frog   311 CLAENSVGPKATRPDDIHVLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDMATLTGAQ 375

  Fly   517 GVATGKYHGAILTNSETWEAKSLQAGRKSGDLLAPIIYCPELHFSEFASAIADMKNSVADRQNAQ 581
            |:||||||.|:|||||.|||..::||||.|||:.|::|||||||:||:||:||||||||||:|||
 Frog   376 GIATGKYHAAVLTNSEEWEAACVKAGRKCGDLVHPLVYCPELHFNEFSSAVADMKNSVADRENAQ 440

  Fly   582 SSCAGLFIAAHLGFDYPGIWMHVDMATPVHCGERATGYGVSLLLTLFGGHTDSKLL--------Q 638
            |||||||||:|:|||:||:|:|||:|:|||.||||||:||:|||:|||..::..||        .
 Frog   441 SSCAGLFIASHIGFDWPGVWVHVDIASPVHAGERATGFGVALLLSLFGRASEDPLLNMVSPLGED 505

  Fly   639 SIASTDEEPPSKR 651
            :|....:|..|||
 Frog   506 NITDNSDERDSKR 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grsmNP_731749.3 Peptidase_M17 141..628 CDD:238247 305/486 (63%)
npepl1NP_001027495.1 Peptidase_M17 23..487 CDD:238247 304/483 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 496 1.000 Domainoid score I366
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 647 1.000 Inparanoid score I792
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006189
OrthoInspector 1 1.000 - - oto105471
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3934
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.050

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